BAC Information

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BAC

Clone NameMSMg01-291A18
Chromosome6 (Build37)
Map Location 15,437,497 - 15,437,682
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r3a, Foxp2, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291A18.T7 (MSMg01no291_a18.b1)MSMg01-291A18.TJ (MSMg01no291_a18.g1)
ACCAG420157AG420158
length746751
length of high quality
(start - end)
280 (422 - 701)187 (125 - 311)
definitionCHROMAT_FILE: MSMg01no291_a18.b1 PHD_FILE: MSMg01no291_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:44 2005CHROMAT_FILE: MSMg01no291_a18.g1 PHD_FILE: MSMg01no291_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCT
TTTTCTGTATCTACCGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTT
TATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCA
TCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGT
TCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATT
CATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTG
NGTTATGTATCACACCCCCAGCGGCTTCATAAAATGAGTTGGGTAGAGTA
CCTCCCACTTCTATTTTGAGAAATAGTTTGTGCAGAATTGGAATTAGATC
TTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGC
TTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGTGAT
ATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGTACCTG
GTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTG
AGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGA
TCTGTTGTTATGTCTCCCTTTTCATTTCTGAATTTGTTAATTAGGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTACCCACAAAATTCAAATGATTTGCAGTAATGAGCTGGAAAGGTGT
GCGTGGAGTTGGGCCGAAAAAGGGGAAGGGGAAAGACAAGAGGAAAAGGA
AGGCTTTCGTTTAAATTCAGGCTTGCACATGTGTTGTTTTATTGTGTTTG
CTAACTTCTGGGTATTTATTTATTTATCTTAATAAGCAAACGGCTATGAC
AAGCATCCGAGATCTTTAACAAAATACAGTGTCAATCACTTACACTATCA
AATGCTTCTGTTTCTTTTTGTCCTCAGGCCTTCTTTGTCCACATGCAACC
TGTTCTTTTTCTACCCCCCCCCCCCCATACAAGCCGGGTAAATTTTTACT
GTCAATCCCAATGTTATAGAAATAAAGCAGAGCAGATCTCTACTTTTCTG
TTTTGGATTTTTTTTTCACTTTTAATGAGAATTCCGCAAAATGTGAAAAA
TATATAGTACATAATGTAGATACCCTCAGACCCATAAAATAAATTATAGC
ACAATACTTTGGAGCTGAAATAAAATGACCGTAGGTTGACCAAAAACATA
ACTGCATGCCTAATAGCGCTGGTAAAGTGCCAGGTTGAGACCCTAGATTG
TTACTGATAAAAATACAGCGGCATACAGGAAAAAATGCTTTTCCACTTCT
TTTCAAGACATTTTTTTAATAAAAAGGATTCTCAATATTGACTTTTCACA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_a18.g1 MSMg01no291_a18.g1 CHROMAT_FILE:
MSMg01no291_a18.g1 PHD_FILE: MSMg01no291_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:44 2005
         (187 letters)



>mm_chr6_15437297_15437883
          Length = 587

 Score =  337 bits (174), Expect = 3e-97
 Identities = 183/186 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggggaaagacaagaggaaaaggaaggctttcgtttaaattcaggcttgcacatgtgt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagaggaaagacaagaggaaaaggaaggctttcgtttaaattcaggcttgcacatgtgt 260

                                                                       
Query: 61  tgttttattgtgtttgctaacttctgggtatttatttatttatcttaataagcaaacggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tgttttattgtgtttgctaacttctgggtatttatttatttatcttaataagcaaacagc 320

                                                                       
Query: 121 tatgacaagcatccgagatctttaacaaaatacagtgtcaatcacttacactatcaaatg 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggacaagcatccgagatctttaacaaaatacagtgtcaatcacttacactatcaaatg 380

                 
Query: 181 cttctg 186
           ||||||
Sbjct: 381 cttctg 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)