BAC Information

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BAC

Clone NameMSMg01-291C17
Chromosome6 (Build37)
Map Location 112,178,768 - 112,179,334
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm7, 1700054K19Rik
Downstream geneLmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291C17.T7 (MSMg01no291_c17.b1)MSMg01-291C17.TJ (MSMg01no291_c17.g1)
ACCAG420244AG420245
length752721
length of high quality
(start - end)
569 (66 - 634)176 (117 - 292)
definitionCHROMAT_FILE: MSMg01no291_c17.b1 PHD_FILE: MSMg01no291_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:53 2005CHROMAT_FILE: MSMg01no291_c17.g1 PHD_FILE: MSMg01no291_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCCC
TTGTTATCACTGATGTGTGAAATAGCAAGCAGGCCTGCCTTCCAGTTCCT
ATCTAGGCTTTCCTCCCTAAAGGACTGTAACCTGTAACTGTAAGTGAAAT
AAAGTTTTTCTCCTCCAAAGACTCTGTGTGTCAGGATATTTGTCACAATA
ATAGAAATGAGGCTAGAGCTTTCCATCAACATAACATAATCCAAGCTGAC
TAAAGAACTCTAATACACATCCGGTCCTTTTGTCGTGCCCCAAATGTCAA
AAGAATGATTAACATTCTTCTCTTAATACAAGCATTCACACATCAATCAC
ATTATTATGCTATTTAAGAGTCATTTATGCCTCTCAATTATTCAAGTTTG
GTAGCACCCCCCCCCAAGACCTGACTCTGTCTTCCTCACCAATCACTTTT
TGTTCCACCTTCCCGTTTGCATTCAATGGTCCATCATGGTAATCTTCTCA
CTCTCAGACAAGCTGCATTATCTCTAACATTCAGGTTTGCCTGTGCTCCT
ACTTGAAATTCTCTGGCCAGCCCACCTTCATCTCCATTGTGTTATTTAAA
TGGCACTTCTTTGTTGAAGATGTTTGGCACTCTACAGCGAGAATTATGGT
CAGTCCCACTTATTATGTTCGCCCTTTGAAGCATGTATTTTCTTTCATAA
CACTTTGCAATTTTAAATGTGTCTATAGAGCTGCCTATTGACCCTTCTTC
AT
GTGGGAGGCCGGGGGCGCTGTTCTTACGTGGGGNGAACTAAGAGGTTCGC
GACTGGCAGGNCTCCTGGGGTACAGAGAAGATCCTGTCTCAGAATTTTCC
CACAAACAGTAAAACCACCAACCAATTAGCCAATCACCCGAACAATTAAC
CAACCAACTAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCA
ACCAACCAACCAATGAGCTAGCCAAACAACAACCAACCATCCAACCAACN
CAACAACCAACCAACCAACCAACCAACCAACCAAAACAAATACTTTTTTT
GAGAAGAGAATGGNAGAAGAATGTGTGGGAATTTTGGTTCCTTTAAACTC
AGAAATGTTATAGGACTATGTTTTTGTTCTAACCCCACCCCCGGGAATGG
GGCTGCTTTAATTGCCTATAGCGGCTGACCATGATTTGCCTTGTGTCTAG
CATGGGTGAATTTTTACCCGTTGCAATAGTCAGGCCATTTATGACATTTG
GAATTCTGGGGACTCTTGAGAGACTCTACAAATGCTAGATCCCCAGAGCA
TCTGTGGTGGTGTTGCTCCTGCTGCTCCCCCTCCTCCTGCTGTCCTCTTC
TTGCACTGCTACTGTCCCTCCTCCTCCNTCTCCTCCTCCTCCTCCTCTCT
TGTTGCCCANCTCCTGCTGATGCTGTTCCCCACATCCTGCTGGTTCTCCT
CCTGCTGGTCCTGTTTCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_c17.b1 MSMg01no291_c17.b1 CHROMAT_FILE:
MSMg01no291_c17.b1 PHD_FILE: MSMg01no291_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:53 2005
         (569 letters)



>mm_chr6_112178566_112179534
          Length = 969

 Score =  891 bits (461), Expect = 0.0
 Identities = 540/581 (92%), Gaps = 26/581 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgaaatagcaagcaggcctgccttccagttcctatctaggctttcctccctaaaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||
Sbjct: 203 tgtgaaatagcaagcaggcctgccttccagttcctatctaggcttccctcagtaaaggac 262

                                                                       
Query: 61  tgtaacctgtaactgtaagtgaaataaagtttttctcctccaaagactctgtgtgtcagg 120
           ||||||||||          ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 tgtaacctgt----------gaaataaagtttttctcctccaaagtctctgtgtgtcagg 312

                                                                       
Query: 121 atatttgtcacaataatagaaatgaggctagagctttccatcaacataacataatccaag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 313 atatttgtcacaataatagaaatgaggctagagctttacatcaacataacataatccaag 372

                                                                       
Query: 181 ctgactaaagaactctaatacacatccggtccttttgtcgtgccccaaatgtcaaaagaa 240
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 373 ctgactaacgaactctaatacacatctggtccttttgtcgtgccccaaatgtcaaaagaa 432

                                                                       
Query: 241 tgattaacattcttctcttaatacaagcattcacaca--------tcaatcacattatta 292
            ||||||||| | ||||||||||||||||||||||||        |||||||||| ||||
Sbjct: 433 agattaacatccatctcttaatacaagcattcacacagtatagcatcaatcacatcatta 492

                                                                       
Query: 293 tgctatttaagagtcatttatgcctctcaattattcaagtttggtagca----ccccccc 348
           |||||||||||| ||||||||||||||||||||||||||||||||| ||    | |||  
Sbjct: 493 tgctatttaagaatcatttatgcctctcaattattcaagtttggtaacaaaatctccc-- 550

                                                                       
Query: 349 ccaagacctgactctgtcttcctcaccaatcactttttgttccaccttcccgtttgcatt 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 --aagacctgactctgtcttcctcaccaatcactttttgttccaccttcccgtttgcatt 608

                                                                       
Query: 409 caatggtccatcatggtaatcttctcactctcagacaagctgcattatctctaacattca 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 caatggtccatcatggtaatcttctcactctcagacaagctgcattatctctaacattca 668

                                                                       
Query: 469 ggtttgcctgtgctcctacttgaaattctctggccagcccaccttcatctccattgtgtt 528
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 669 ggtttgcctgtgctcctacttgaaattctctggccagcccaccttcatttccattgtgtt 728

                                                    
Query: 529 atttaaatggcacttctttgttgaagatgtttggcactcta 569
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atttaaatggcacttctttgttgaagatgtttggcactcta 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)