CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGTATTAGTAAGTCTCCTCAGCAGCTTGTACTTCACTAAGGCCAAA
CACTGGCTGTCATAGCTTTGCACATCTTGCTTTCAAGATAATTCTTCTAA
GTCAGGTTAGTTCCTAAACTTGCCATCGTTTTCATTCCATACACCAAGAA
CCCCTTCTGCAACACCCCTGACCAACTTGAAAAACCAGAAACTCTGTATC
GCTATGCTCCCTGTAATTATAGTTTCGTCTCATGCCCTTTCCTCTAACCT
TGCTCCTTGATTTTACATTTCTGTTTGCGTGTACATGTAAAATCCTATTT
GTATGATTATATTATGTAGTTATGCCCAACTGTTTCCACATGCAAAGTCG
TATGAGTGTGCTCTACCGCGCGCGTATGTGAGAGATGTGTGCATGTGAGA
CACACACACAAACACACTGACTCTCACACACAAACATATACACATTTCAT
AACCAGATCTTTCAGAGATAAGTTTGATGCCTGGGCAGTGACAGTTATTG
AATAATTTTGGACATACACTAAGAGCTTGAGCAATTATTTAGGCCAGCAG
CAGATAAGGAGGGGGCATTTGTACTGATCTGACTGATGAGCAGGAAACAT
GTAAAAATGTGGAACTAGAAAGAAATGTTCAGTCTGGAAGAACAACTGTA
CAGAAGTCCTGAGATGTGAACCAGTAAGTTAAATTCAAATGTCAGAAAAG
A

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCCTGCTAATGTCAACTACATAT
TTAAAGGGTTGTTTTTATTTTACTTCCAAATGTGTTTGCTATAATTTTTA
TGTATTTTGGGGGGATTTTTGTTATTCATTCTTAGTTTAATTACGGTCAT
ATAAAATTGCATTCATCACCTTCTATGAAACTTAATGAAGTTTAATTGGT
GTTTTGGTTTATGGAACAATTGTGTAAAAAATTTCAAACCTTTAAAAACA
AAATGTGTTTTGGCAGTTTCAAATTGAATATATTAATACCCAGTGCATGA
TAAATATTCAAATTNGTCNTACTCGCCCTCAACCCCCATTTACTAATGCA
TGCCTCATTCCAATCTGCCCCACCAGATGAAAAAAATATCACTAACTGAG
AATGTTCTATACATTTTGCTATGTCACTCTGACAGAAATACATGTATCCT
ATACTTTCCTATAATATAAGGTTTATGTTACTACTAAAATTATTATTTCT
TCCTTTATTGTACTTACTTTATCCTCAGTAATTATTAAGGAGTGTGCGTA
TGTCCAGCGACCTTTGCTGTGCCACTGGACCACCTTCAGCTCGTAAGCTT
GAGAAGGTGCTTCGCTACTTAGCCCAAGCTGGCCTCATGGTTGATAACCT
CCTTGGTCCCAATGTGAGAAATGATATTAATGGCTTTGCACCCCTTTTC

Query= MSMg01no291_h14.b1 MSMg01no291_h14.b1 CHROMAT_FILE:
MSMg01no291_h14.b1 PHD_FILE: MSMg01no291_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:16 2005
         (318 letters)



>mm_chr6_78880724_78881441
          Length = 718

 Score =  344 bits (178), Expect = 3e-99
 Identities = 181/182 (99%)
 Strand = Plus / Minus

                                                                       
Query: 135 tttcattccatacaccaagaaccccttctgcaacacccctgaccaacttgaaaaaccaga 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tttcattccatacaccaagaaccccttctgcaacacccctgaccaacttgaaaaaccaga 457

                                                                       
Query: 195 aactctgtatcgctatgctccctgtaattatagtttcgtctcatgccctttcctctaacc 254
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaccctgtatcgctatgctccctgtaattatagtttcgtctcatgccctttcctctaacc 397

                                                                       
Query: 255 ttgctccttgattttacatttctgtttgcgtgtacatgtaaaatcctatttgtatgatta 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttgctccttgattttacatttctgtttgcgtgtacatgtaaaatcctatttgtatgatta 337

             
Query: 315 ta 316
           ||
Sbjct: 336 ta 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no291_h14.g1 MSMg01no291_h14.g1 CHROMAT_FILE:
MSMg01no291_h14.g1 PHD_FILE: MSMg01no291_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:16 2005
         (288 letters)



>mm_chr6_78815407_78816094
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctgctaatgtcaactacatatttaaagggttgtttttattttacttccaaatgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcctgctaatgtcaactacatatttaaagggttgtttttattttacttccaaatgtgtt 260

                                                                       
Query: 61  tgctataatttttatgtattttggggggatttttgttattcattcttagtttaattacgg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctataatttttatgtgttttggggggatttttgttattcattcttagtttaattacgg 320

                                                                       
Query: 121 tcatataaaattgcattcatcaccttctatgaaacttaatgaagtttaattggtgttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatataaaattgcattcatcaccttctatgaaacttaatgaagtttaattggtgttttg 380

                                                                       
Query: 181 gtttatggaacaattgtgtaaaaaatttcaaacctttaaaaacaaaatgtgttttggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttatggaacaattgtgtaaaaaatttcaaacctttaaaaacaaaatgtgttttggcag 440

                                                          
Query: 241 tttcaaattgaatatattaatacccagtgcatgataaatattcaaat 287
           |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tttcaaattgaatatattaatacccagtgcatgataaatactcaaat 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)