BAC Information

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BAC

Clone NameMSMg01-292F20
Chromosome6 (Build37)
Map Location 126,925,979 - 127,105,445
singlet/doubletdoublet
Overlap geneLOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2
Upstream geneTmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e
Downstream geneTpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8, Tspan11, Tspan9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292F20.T7 (MSMg01no292_f20.b1)MSMg01-292F20.TJ (MSMg01no292_f20.g1)
ACCAG421106AG421107
length745783
length of high quality
(start - end)
366 (45 - 410)191 (77 - 267)
definitionCHROMAT_FILE: MSMg01no292_f20.b1 PHD_FILE: MSMg01no292_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:24 2005CHROMAT_FILE: MSMg01no292_f20.g1 PHD_FILE: MSMg01no292_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,925,979 - 126,926,338)(127,105,255 - 127,105,445)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTACTGCCACTCTCACCTTCCCTCTGTGACCTTGCCCAGGTCTAT
TAATAACATTTCACGGGCTGGCGAAATCGTGTTCTTTTCTGCCGACCTGA
TGTAAGTTAGTGTAGACCCACGCCTGGCAGCATTCTGGCGCTCTGCAATG
CTGACAACCGGATCGCTGTCACTTCTCCATCCCCTGGGCTCCCTGTCTCA
CTGCTCTTCCACACCCGTCTCCAGGCAGAAACAGTATTCGGATCTCTGTC
TCTGATCGCTGATGTTTATCCTCCTTTGTCCAAATTGGCTTTGGGATCCT
CTTTCCTCATAGGCTCTTAGTCTGCCAGCATGTCAGAACTGTGGCAGACA
CGCTCTGGCCACCCCCCATGGAGGAATATCTCTTGGTTTCCTACTCCAGG
AAGAGATGGAACACCTAGTTCACACTGACCATCAGACACTAAGTTTTCCA
AGTTCTTTACCAAGGGGTTTGCACTGCATCTGGAGAGTCTCCATTCCCTT
GAAGAAATGGTCTTTCAAGCACCATTGCTCTCATCAGAATTATTTCCAAT
GCCCGGCAGATGGTTAGTAATCAGAGAAGGCCAGGTCAGGATCAAAGATT
ATCTTTATTAAGGTCATGTCCCTCACCTGTTATGCTTCCTCCACTCCATT
TTTCCCCTCCCTTCTCCCTACTCTCCTCCTCTCTCTTTTTTCCCC
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCGGGCGGCCCTCGCCACCAGCAA
TCGCGATACTGGGACGGATCTCCGGGACCAGAAGAACTGGACCGCAAACT
AAAGAAACCAGCCTTTTTTGGAGCAAACGTCGGGTCTCCATATCAAAGTA
AATAAATAAATAAATATAAATAAGTGTGTAGGGAGGGGGAACCACTGGGG
GGGGGTGAAAGATGNNTGGTATNNGAGAGNGTAGNTTTGNNGNTGGNNNG
NAAATAGAGAAGAGTTTTTTTTTTTAATAAAGAGAAAAAAAAAAGAAAAA
AAAAGTTTTGGATAGGTTTCCCCCCCCCCCCCCCCGAAAAGATGAAGGGG
GGTGAGGGGGGAGACCCCCCCCCTTTAAAAAAAAAAAAAAAATGNGGGGG
GGGGGGGGGGGTTNNTTTGATTATAGTTTTAGATTTTATATTAAATAGTT
AAATTATTTGTTGAATTTAGTATTTTAAATAGAAATTAAGATAAAAAAAA
ATATAAAATATAATAATTTTTTATTAATGTTGAATTTTTATTTGTGATAT
TTATTTTTTAATAAAGTTAGGTAGGGGGTGTATTATATTTATTTTTTTTT
AAACCATTCTCCCCCCTTCTCCCTTCCTTTTCCCTTTTTTCCGTTTGCAC
TCCCTTTTTCCCCTTTCCCTGTCTCTTACCATATCTCGCCTCCTCTGCTC
TCACAATGTCATTCCCTACCATATTCCCACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_f20.b1 MSMg01no292_f20.b1 CHROMAT_FILE:
MSMg01no292_f20.b1 PHD_FILE: MSMg01no292_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:24 2005
         (366 letters)



>mm_chr6_126925776_126926540
          Length = 765

 Score =  636 bits (329), Expect = 0.0
 Identities = 353/361 (97%), Gaps = 1/361 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttactgccactctcaccttccctctgtgaccttgcccaggtctattaataac 63
           |||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 ggaattctttaccgcca-tctcaccttccctctgtgaccttgcccaggtctactaataac 262

                                                                       
Query: 64  atttcacgggctggcgaaatcgtgttcttttctgccgacctgatgtaagttagtgtagac 123
           |||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 atttcacgggctggggaaattgtgttcttttctgccgacctgatgtgagttagtgtagac 322

                                                                       
Query: 124 ccacgcctggcagcattctggcgctctgcaatgctgacaaccggatcgctgtcacttctc 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccacacctggcagcattctggcgctctgcaatgctgacaaccggatcgctgtcacttctc 382

                                                                       
Query: 184 catcccctgggctccctgtctcactgctcttccacacccgtctccaggcagaaacagtat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catcccctgggctccctgtctcactgctcttccacacccgtctccaggcagaaacagtat 442

                                                                       
Query: 244 tcggatctctgtctctgatcgctgatgtttatcctcctttgtccaaattggctttgggat 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcggatctctgtctctgatcgttgatgtttatcctcctttgtccaaattggctttgggat 502

                                                                       
Query: 304 cctctttcctcataggctcttagtctgccagcatgtcagaactgtggcagacacgctctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctctttcctcataggctcttagtctgccagcatgtcagaactgtggcagacacgctctg 562

            
Query: 364 g 364
           |
Sbjct: 563 g 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 765
Length adjustment: 9
Effective length of query: 357
Effective length of database: 756
Effective search space:   269892
Effective search space used:   269892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no292_f20.g1 MSMg01no292_f20.g1 CHROMAT_FILE:
MSMg01no292_f20.g1 PHD_FILE: MSMg01no292_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:25 2005
         (191 letters)



>mm_chr6_127105124_127105714
          Length = 591

 Score =  273 bits (141), Expect = 6e-78
 Identities = 179/193 (92%), Gaps = 7/193 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgggcggccctcgccaccagcaatcgcgatactgggacggatctccgggaccagaagaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 322 ccgggcggccctcgccaccagcaatcgcgatactgggacggatctctgggaccagaagaa 263

                                                                       
Query: 61  ctggaccgcaaactaaagaaaccagccttttttggagcaaacgtcgggtctccatatcaa 120
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 262 ctggaccgcaaactaaagaaaccagccttttctggagcaaacggcgggtctccatgtcaa 203

                                                                       
Query: 121 agtaaa--taaata-a-ataaatataaataagtgtgtagggagggggaa-ccactggggg 175
           ||||||  || ||| | |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 202 agtaaaaatatatatatataaatataaataagtgtgtagggagggggaaaccattggggg 143

                        
Query: 176 ggggtgaaagatg 188
           ||  |||| ||||
Sbjct: 142 gg--tgaaggatg 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)