BAC Information

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BAC

Clone NameMSMg01-292H12
Chromosome6 (Build37)
Map Location 75,115,903 - 75,116,182
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145, EG546907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292H12.T7 (MSMg01no292_h12.b1)MSMg01-292H12.TJ (MSMg01no292_h12.g1)
ACCAG421181AG421182
length767773
length of high quality
(start - end)
225 (129 - 353)281 (131 - 411)
definitionCHROMAT_FILE: MSMg01no292_h12.b1 PHD_FILE: MSMg01no292_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:32 2005CHROMAT_FILE: MSMg01no292_h12.g1 PHD_FILE: MSMg01no292_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACAGTTTGACCCACAGTGTCGACTAACATGGACACATGGGCGCCT
CTCAGAGACTGAATCACCAAACCCAATGCAAGAGCTGAAGTGAGCCCACA
CTTCTCGAGGGCACATATGTAGCAGAAACACAGCTTGGTCTTCATGTGGG
GCCTCCAAGAACTGTTGCCTGCCCATGGATCCTGTTTTCTCTGCCTTGCC
TTGTCTGGCCTCAGTGGGAGAGGAAGTGCCTAGTCCTATATTAACTTTAC
ATACCAGGATAGGTTGGTACATGTGTGGGAGAGGGCATCCCCTTCACCGA
GAAGGAGAGATTTTAGGTGTGCTATATCAAATGGTGACTAAGCAGAGAAT
GAAAGACTGCTTATCCCCACGCGAATAAAAAAAAAAAAAGCGAAAGACAG
ACCTAACAGAATACGTTCACTTTACACTCTTCCTTTCCTTGTTCCTTGAT
ATCATAAATCACTCTAAAATGAATTCTTTATTGTGGCTAATTTACATGAA
CTTGCTTAGAGCTAAAAAGTAAATGAATAAATAACAATGTTTACCGAATG
AAATGGATTTTTCTATCTAGAACAATTACATTCTTTTCACACACTACTTT
CAAATGAAGAATATACTTGTAGGAAACAAATTATTATTTGCCCAATTACA
CAGGTAGATATTCACCTAGGTTTTATCTCAGAGTATTTATGTTCTCCACA
CACCTCTTTTATTACAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAAGTCAAACAAGAGGAGACA
ACGTAATATTAATTAAGTAACATATTAACTGCACTCTGCTTTGAGTCTCA
GTAACAGTGCTAAACTAAGTTTCATTCAGAAGAGAATATGGAAGTACAAT
CTTAGAAAATATTCTTGCTTGAAGATAATGTAGATACTGAAATTTTGAAT
TCAATCCTGTACTTATCACAGAAAACATTTATAGTAGCCTACTTATATAT
ATTGTATTTTTAATATTTCAGGTTGGATAGAATAAAATAAAGTCTCAAAA
CATTTATTAATCAGTTTTTTATATATTATAGCGCAATATGAGTGGTTATG
CCGATGATCCTCCCACGCCCCCAGCAGAAATTTTGCAATTTTTTTCTTTT
AATGAGTACCTAATTAAACCATATTGAAGAATGTAGCCTTATGTATATTC
ACAAGGAAGTCATTATGATAAGACAAAGCATAATTAACTACCAATAAGAG
ATGTTTTCTATTATAAAGATTTATTCCATATAATTTATTATTGTCTGGTA
GAATTAGGGCTAAGCTCCACATATTATCTTCTTGATCTATTGTTCCACTC
TACTGAAATCCTTTTTCCTATTTGACTTTCTCCCAATTATTCGTATTTGT
CTGGGTTCCACTCTATCTAAATTTCATGTCTTTTCTTCCTTGTCTATTGT
TTCTGTTACCTTTCTATCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_h12.g1 MSMg01no292_h12.g1 CHROMAT_FILE:
MSMg01no292_h12.g1 PHD_FILE: MSMg01no292_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:33 2005
         (281 letters)



>mm_chr6_75115703_75116382
          Length = 680

 Score =  482 bits (249), Expect = e-140
 Identities = 273/281 (97%), Gaps = 1/281 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcactctgctttgagtctcagtaacagtgctaaactaagtttcattcagaagagaatatg 60
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gcactatgctttgagtctcagtaacagt-ctaaactaagtttcattcagaagagaatatg 259

                                                                       
Query: 61  gaagtacaatcttagaaaatattcttgcttgaagataatgtagatactgaaattttgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaagtacaatcttagaaaatattcttgcttgaagataatgtagatactgaaattttgaat 319

                                                                       
Query: 121 tcaatcctgtacttatcacagaaaacatttatagtagcctacttatatatattgtatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaatcctgtacttatcacagaaaacatttatagtagcctacttatatatattgtatttt 379

                                                                       
Query: 181 taatatttcaggttggatagaataaaataaagtctcaaaacatttattaatcagtttttt 240
           |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 taatatttcaagttgtatagaataaaataaagtctcaaaacatttattaatcagcttttt 439

                                                    
Query: 241 atatattatagcgcaatatgagtggttatgccgatgatcct 281
           ||||||||||| | ||||||||||||||||| |||||||||
Sbjct: 440 atatattatagtgtaatatgagtggttatgcagatgatcct 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space:   182512
Effective search space used:   182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)