BAC Information

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BAC

Clone NameMSMg01-292I17
Chromosome6 (Build37)
Map Location 20,437,973 - 20,438,263
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040838, Kcnd2, LOC100041343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292I17.T7 (MSMg01no292_i17.b1)MSMg01-292I17.TJ (MSMg01no292_i17.g1)
ACCAG421237AG421238
length763773
length of high quality
(start - end)
292 (70 - 361)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no292_i17.b1 PHD_FILE: MSMg01no292_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:38 2005CHROMAT_FILE: MSMg01no292_i17.g1 PHD_FILE: MSMg01no292_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCCATTATCACCAGGTAAACTTTTATTTAATTAATTTTCAAAT
TTCTTTACATACCTTTAATTTGTCACAGAATATGGTCCTCTATGTTACTT
TACTGAAGATTTTTGGGTTACTGCACATGCACATTGGGTTTCAGTTTCTG
TGTCTTTTGCAGTGATTTTTATTTTTTTAAGATTAATTTAATGAAATGAA
CTCTCCATCTGCATGTAAACCTGAGAGTTAGTAGAGAACATCAATTCCCA
TTATAGATATTTGTTATCCACCTTGTGATTGCTGGGAATTCAATCCAGAG
CCTATCAAAGAATTTTCTATGCTCCCAACCACCGCCCCATCTTTCCAGCT
ACTTGCGACATTTCCAACCCCCCCCACNAACAACATTTATTATTTCTGAG
AAGAATGTCATTGAAAAGTGATGTCTACCACTGATGGATGAGCAGAAAAA
GAAAATGGGACATATATATCCTAATCGAATACTATTAAGCCATAAACATA
ATAAAATGTTGTCATTTATGGCCAAATAAATGGACTTTAAGAAACATATT
TTATGCAAATAATGTGATATTTTATTACACAAATAGTACTTGTTCCCTCG
TATTAATGGACTCACAATACCTGATTTCCTGCCACCATTTTTTATTATAG
CGCCATTTTTTATTCCTCCCTTCCTTGTACCATTCTACACCTTCATTACC
TTTTGTTCTCGTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTGTCAAAAGGAAGTGCAGGG
CCAAAGATCAGAAACTGAAGGAACAGCCATCCAGGGACTGCCACACGTAG
GGATCCTTCCCATCTGCTCACACCAAACTCAGACTCTATTGCTGATGCCA
AGAAGTGCTTACTGACAGGAGCCCGATATAGCTTTCTCCATGAGAGCCTC
TGCCAGAGCCGGACCAATATAGATGAGAATGTATACAGCCAAACATTGGA
CTGAACATGAGAACCCCAATGGGAAGGAAGTTAGGGCCAGGACAGTAGGA
ACTAAAGGGGTTTGGATTCTTTTACCCAGACTAGCCCTATCAACCAAGCA
GATCCCCCTAAGGCCCCCCCCCCCAAACCATAAAAAAAAGAGAACACAGG
GGTTACCCATGGCTCCATGTGTATATAGGGCAGAGGATTGCCTTATCTGG
CATCACTGGGAAAGGAGCCCCTTGGTCCAATGGAAGCCTGATGAGTCAGA
ATAGGGGAACGCTAGGACGCTGAGGCAGAAGTGGATGGGTGGTGGGGAAG
CACCTTTATCACAGTATGTTAAAGTAACAACCGTAACCCGACTCCGCGTA
AACGAACGATATATTTTCTTATTTCAGTTCATCCGTATATTCGTCCACCC
ATACAACCTATATAATCTATTATTTCCCCCCCATCCTCACTTATTTTTTC
ACTCCTTTTTCCTTCTCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_i17.b1 MSMg01no292_i17.b1 CHROMAT_FILE:
MSMg01no292_i17.b1 PHD_FILE: MSMg01no292_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:38 2005
         (292 letters)



>mm_chr6_20437919_20438609
          Length = 691

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtaaacttttatttaattaattttcaaatttctttacatacctttaatttgtcacaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 345 aggtaaacttttatttaattaattttcaaatttctttacatacctttaatttgtta-aga 287

                                                                       
Query: 61  atatggtcctctatgttactttactgaagatttttgggttactgcacatgcacattgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atatggtcctctatgttactttactgaagatttttgggttactgcacatgcacattgggt 227

                                                                       
Query: 121 ttcagtttctgtgtcttttgcagtgatttttatttttttaagattaatttaatgaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ttcagtttctgtgtcttttgcagtgatttttatttttttaagattaatttaatgaaatga 167

                                                                       
Query: 181 actctccatctgcatgtaaacctgagagttagtagagaacatcaattcccattatagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 actctccatctgcatgtaaacctgagagttagtagagaacatcaattcccattatagata 107

                                                               
Query: 241 tttgttatccaccttgtgattgctgggaattcaatccagagcctatcaaaga 292
           |||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 106 tttgttatccaccaagtgattgctgggaattcaatccagagcctatcaaaga 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)