BAC Information

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BAC

Clone NameMSMg01-292N19
Chromosome6 (Build37)
Map Location 66,947,108 - 66,947,680
singlet/doubletsinglet
Overlap geneGng12
Upstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik
Downstream geneLOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292N19.T7 (MSMg01no292_n19.b1)MSMg01-292N19.TJ (MSMg01no292_n19.g1)
ACCAG421467AG421468
length748729
length of high quality
(start - end)		349 (65 - 413)573 (77 - 649)
definitionCHROMAT_FILE: MSMg01no292_n19.b1 PHD_FILE: MSMg01no292_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:03 2005CHROMAT_FILE: MSMg01no292_n19.g1 PHD_FILE: MSMg01no292_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXGTTGGCTCAAGGACTACCAAGGGCTTTGATGAAGGC
CAGGAAGCAAAGTTTGATTTTGCTTAGGTATTTGGCAAGTCATTGCTTCG
AGGCACCTATAACAAAACAATACTTAAAGAAAGCACAGAGATCCATTCTC
AAGGACAAAATTGGAGCATATGTTCTGTAGGATGCCACAGTTCCAGGAGA
TTAAGTTTTCATGAAACTCTTTGCCTCGGGACTGCTTCCAGGTTTCTAAA
CCTGTCAAGCAAGTCACTACTGGAGTGGATGTAGCAGGTGGGTATTGAAA
CACCTCCTGCAGTGTTCTTACTATTATTTTGGTTGTTCATGGTCTTTTGT
GATACCATATGACCCCCCGTATTATTTTTCTAAGCCTATCGTGATGGTTT
GTTTATGCTCGACACCAGGGAGTGGCTCTATTAGAAGGTGTGGTCCTTAT
GGGAGTAGGTGTGTCCCCATTGTTCTGTGTTTTTTCGACCCCTCCTATCT
TTTTCCCTTCATGCCTGCATTTTTGTTCTTATTTTTTCTCTTTGATTATA
TTATTTTGCCCGCCTCCTCTTGCGCCCTCGCCTGTACTCTATATAACCAC
CGCCTCTCTTTTTTCCTTCCGTTGTGACTTCCTTCATTCTCGTTTACACC
TTCCACCCTTATTCTACTTTTTTTACCTATCTTGTCTTTATTTCGTCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGCCCCTGAGCTATAGGCATA
GAGCAGGAATTAAGTAATAAAGGGGATTAGTCACTTCAAGCAAAAGTAGT
CACTGAAGCTTTTCCTGAAGAGGATAGCAATGTAAACAGGGACCTAAAGC
TAGAGGAAATTTAAATAGAGCCAAGAAGCTGGCAGAGAGCTTGAGTGAAG
GCCCAAGACTTAAAAACACAATACAAAGTCAGGGACATGAATGTTACACC
CTGACACTGTTTCTGTGTACCAATAAAAAAATTCCAGGCCTGAACCCTAG
AATCAGTTTATCTGAACTCAAACTTTATCCTAGCAGCTTTTTGGATGCCT
GGTGCTTGACACATGGCTGATGTCATGTATGAAACTAGAAATAAAATGGA
GCCTCCCTCAGGTTATTTTGAGGACTTAGGACTGTGTACCAAGTGCTGTG
TCTCACCTGGTACCTGGCATTTGATGCACACTATATAGAAACAAGCTTCT
TTTGTGGTTGAGTTTGATTATGATGCAGAACTGTGAGAGGGCCTTGAATG
CAAACCCTTTGGACTTTGCCAGGGGCACCCTGGGAAACCCCTGCATCTTG
TTCAAGTCGGCCTTTCAGAGCTATAAGCTAGGGCTGGAATGGGCTGGTCT
AGCCAGATGAAACTGGAAGGTTGGTGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_n19.g1 MSMg01no292_n19.g1 CHROMAT_FILE:
MSMg01no292_n19.g1 PHD_FILE: MSMg01no292_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:03 2005
         (573 letters)



>mm_chr6_66946908_66947880
          Length = 973

 Score = 1093 bits (565), Expect = 0.0
 Identities = 571/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagcccctgagctataggcatagagcaggaattaagtaataaaggggattagtcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagcccctgagctataggcatagagcaggaattaagtaataaaggggattagtcactt 260

                                                                       
Query: 61  caagcaaaagtagtcactgaagcttttcctgaagaggatagcaatgtaaacagggaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcaaaagtagtcactgaagcttttcctgaagaggatagcaatgtaaacagggaccta 320

                                                                       
Query: 121 aagctagaggaaatttaaatagagccaagaagctggcagagagcttgagtgaaggcccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctagaggaaatttaaatagagccaagaagctggcagagagcttgagtgaaggcccaa 380

                                                                       
Query: 181 gacttaaaaacacaatacaaagtcagggacatgaatgttacaccctgacactgtttctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttaaaaacacaatacaaagtcagggacatgaatgttacaccctgacactgtttctgt 440

                                                                       
Query: 241 gtaccaataaaaaaattccaggcctgaaccctagaatcagtttatctgaactcaaacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaccaataaaaaaattccaggcctgaaccctagaatcagtttatctgaactcaaacttt 500

                                                                       
Query: 301 atcctagcagctttttggatgcctggtgcttgacacatggctgatgtcatgtatgaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcctagcagctttttggatgcctggtgcttgacacatggctgatgtcatgtatgaaact 560

                                                                       
Query: 361 agaaataaaatggagcctccctcaggttattttgaggacttaggactgtgtaccaagtgc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 agaaataaaatggagcctccctcaggttattttgaggacttaggactgtgcaccaagtgc 620

                                                                       
Query: 421 tgtgtctcacctggtacctggcatttgatgcacactatatagaaacaagcttcttttgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtctcacctggtacctggcatttgatgcacactatatagaaacaagcttcttttgtg 680

                                                                       
Query: 481 gttgagtttgattatgatgcagaactgtgagagggccttgaatgcaaaccctttggactt 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgagttttattatgatgcagaactgtgagagggccttgaatgcaaaccctttggactt 740

                                            
Query: 541 tgccaggggcaccctgggaaacccctgcatctt 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 tgccaggggcaccctgggaaacccctgcatctt 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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