BAC Information

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BAC

Clone NameMSMg01-292O09
Chromosome6 (Build37)
Map Location 75,940,717 - 75,940,973
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292O09.T7 (MSMg01no292_o09.b1)MSMg01-292O09.TJ (MSMg01no292_o09.g1)
ACCAG421494
length729733
length of high quality
(start - end)
---282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no292_o09.b1 PHD_FILE: MSMg01no292_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:06 2005CHROMAT_FILE: MSMg01no292_o09.g1 PHD_FILE: MSMg01no292_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGGATCCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCAAACATTATTA
CCTTTTGCTTTGTCTCTTTGTTGTGGCTT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATACATGAATACTGCACATATATC
ATTCTCCTGTGTCTCTTTCCCCCTTTACACTTGTCCTAAATCCCCCTGTA
TTTATGACATTTTCTTTGATCATCACACACTCACACACACACACACACAC
ACACACACACACACACACACACACACCACACTCCAACCTACCAAGTCTAT
TTAGTGCTGTTGTTGTGTATGTGTATTTAGGCTTGATGACTTGGGACTGC
TTAACCTATCTGGGGGCTGATTCTTGAAGAAACTGTCTTTCCCTCTTTAA
TCAGTATTANTTGNCTCCCCCNTCCTNTNTCACAGGCGAGACCTTGTGAA
ATTCTTCGTATCCACCCACAAAAAATAAGAAGATCTTTAGCAACTTAATA
TATTTGAAGTCACTACACCTGCCATTCTTGATAATGCTATAAATTTAGTG
AAATTATATTGAGACATTTAGTAATTAATAAGTTTCACTTTTCTTTTATA
CTTCTATGTTAATATTTCTTTTTCTAAAGAATTTCTACTGGAAAAGTCCA
ACAAACTTGCAAATGCTTTATACATTTCTAAACCTGGCCTGCTAGCTCTT
CTGCTAATATTAGTCTTTAATCCTTTAAAGCTCTAGTAAATAACACTTTG
AACTGCTTCTGCCTTACATTTTCACTACTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_o09.g1 MSMg01no292_o09.g1 CHROMAT_FILE:
MSMg01no292_o09.g1 PHD_FILE: MSMg01no292_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:06 2005
         (282 letters)



>mm_chr6_75940360_75941039
          Length = 680

 Score =  410 bits (212), Expect = e-119
 Identities = 254/282 (90%), Gaps = 26/282 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacatgaatactgcacatatatcattctcctgtgtctctttccccc-tttacacttgt 59
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 614 catacatgaatactgcacatatatcattctcctgtgtctctttccccctttta-acttgt 556

                                                                       
Query: 60  cctaaatccccctgtatttatgacattttctttgatcatcacacactcacacacacacac 119
           |||||||||||||||||||||||||||||||||||||||||||   |             
Sbjct: 555 cctaaatccccctgtatttatgacattttctttgatcatcaca---t------------- 512

                                                                       
Query: 120 acacacacacacacacacacacacacacacaccacactccaacctaccaagtctatttag 179
                 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 511 ------acacacacacacacacacacacacaccacacaccaacctaccaagtctatttag 458

                                                                       
Query: 180 tgctgttgttgtgtatgtgtatttaggcttgatgacttgggactgcttaacctatctggg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 457 tgctgttgttgtgtatgtgtatttaggcttgatgacttgggactgcttaacctatcaggg 398

                                                     
Query: 240 ggctgattcttgaagaaactgtctttccctctttaatcagta 281
           ||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 397 ggctgattcttgaagaaact--ctttccctctttaatcagta 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 680
Length adjustment: 9
Effective length of query: 273
Effective length of database: 671
Effective search space:   183183
Effective search space used:   183183
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)