TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTCCACCTCTAAGACCCAAGGGCTAGTGATGGTGTCACCTTTG
AAAATAAAGGATTTCTGAACTGGTACTGCCAGCCACAGGGGTAAAGTACT
GTAAGCTCCGGCAACATATTTGCCGTCTCTGACTAGTCTTCTCCACCCCT
CTATATGTTCTATCACCTAAGAAATATAGAATTTGGGGCTCCAGATTTCT
GAGAAGCTGAACCTCAGCGGAGAGGGAAAAGCAATAGAGGGATAACCCTT
GCCATGCTCTTCTCCAAAATAATCATAATTAGAAAGGGCAGAAGAAAAGT
TGGGAGGAAGATCAAACATGGTATGGAAAGAGGAACAGACAGGATACTAA
GTACAAAAATAATTTTGGCTCCTAATTGGGCACAAACTATGTGCAAATGA
AGTAGGAACAATTCCTCTGATAGGAAGAGCTTAACCAAGACTAGTTAGAA
AGAAAAATCTCCATCCACATGCAAGATGTGTCAGCATCCAGATAATGGCA
CTAGACCCAAGCAGAAGGCAGAAAGAAAGTCAGATTGCACTGACAGACAG
TATGAACTTGAGGGCTTTCATAAGAATGTTGCTACTCTAAAGTCGTAAAC
ACTTTAGGCAGTTATTTATTCACTACCTGGAGAAAGTGTAGAGATAAGTG
TTCTGGTTTCAGGGTGTTTCCTGTATTTAAGGGGAAAATGAA

CTATTTTTCTCTTTTTTTTTTTTTTTTTATTTAGAGATTCATCAACAACN
NNNNAATCCTAAGACATTGCGTACGTCTGGTAGACTGCCTGTATTTCATA
GTATACGCGAAATTATTTTAGGATTTTCAGAAATAAGGTGATAGTGTATG
GAGTTACTTATTGATAATAATAGGATTGTCTGAATTTGTTACCCCTTAGC
CATAGGGTGTATAAGTATTAGTAAGACTCACGTTAACATATGTTGTGCGT
CATCTGATATATTCTTCATTAACACCCTCTATCATGTGTCTATCACGCTA
CAGATATATTAGAATGTTGGTGGTTACTAGAATTTGCTGATATATCTGAT
TCCTTATTTGGTAGAGGGATAAAGGATATAGTATGGGATATATTCCTTGC
TAATGCATCAATCTTTTAAAATATACCATTATTTTTTTCTTGGGTCAGTA
TAGAAATATTTAGGACAGAGACAAAAATTTTTANNGTAGATTGTCCCCCG
CCCCCCCCCCCCACTAGTTATATTTATAGTTATTAATACGTTGTGTTTGT
GTGTCTCCCCTTACTAGGAAAAAATAAAAAAATAAAGAAAGCCTTTCTGT
GGGGTGGTGGGAGCGGAATTTCTATTTTGAATTTGGAATATATGTTTTAA
ATTTATATTACTTATCTTAAGATTTTTGGAAGTATACTCTTTTTAGTTTT
TATATATGATTATTGAATGTGGTAACTTGTTTATTCCGTGATTAATACGG
TTTTTATTATGTACCTTTTCTTCCTTTATTAGATCGTATATTTTATATTC
TTCTTCCATTCGCGATTACGGACCATAATTCGTAAAGGGTTTCGTTTGTT
GTGTTATCTAGCGTTATATCATATTGTTGTTCTCTACCTTTTACCATGTT
AGGATAAAACGAACTTTTGAAGGAATCGATTATATGTATATTATTATTAC
ATTGGTAAGAATATGTAGTTNCCCAGCATTATATATGAATATATGATGTC
AACACTAGTATGGTAAATCGCCTATATACGTGTAAACAGTTCTATAATAC
GAT

Query= MSMg01no293_d01.b1 MSMg01no293_d01.b1 CHROMAT_FILE:
MSMg01no293_d01.b1 PHD_FILE: MSMg01no293_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:31 2005
         (647 letters)



>mm_chr6_24099248_24100294
          Length = 1047

 Score = 1197 bits (619), Expect = 0.0
 Identities = 637/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttccacctctaagacccaagggctagtgatggtgtcacctttgaaaataaag 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttccacctctaagacccaggggctagtgatggtgtcacctttgaaaataaag 264

                                                                       
Query: 65  gatttctgaactggtactgccagccacaggggtaaagtactgtaagctccggcaacatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatttctgaactggtactgccagccacaggggtaaagtactgtaagctccggcaacatat 324

                                                                       
Query: 125 ttgccgtctctgactagtcttctccacccctctatatgttctatcacctaagaaatatag 184
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 ttgctgtctctgactagtcttctccacccctctacatgttctatcacctaagaaatatag 384

                                                                       
Query: 185 aatttggggctccagatttctgagaagctgaacctcagcggagagggaaaagcaatagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatttggggctccagatttctgagaagctgaacctcagcggagagggaaaagcaatagag 444

                                                                       
Query: 245 ggataacccttgccatgctcttctccaaaataatcataattagaaagggcagaagaaaag 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ggataacccttgccatgctcttctccaaaataatcataattagaaaggacagaagaaaag 504

                                                                       
Query: 305 ttgggaggaagatcaaacatggtatggaaagaggaacagacaggatactaagtacaaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgggaggaagatcaaacatggtatggaaagaggaacagacaggatactaagtacaaaaa 564

                                                                       
Query: 365 taattttggctcctaattgggcacaaactatgtgcaaatgaagtaggaacaattcctctg 424
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 565 taattttggctcctaattgggcacagactatgtgcaaatgaagtagggacaattcctctg 624

                                                                       
Query: 425 ataggaagagcttaaccaagactagttagaaagaaaaatctccatccacatgcaagatgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ataggaagagcttaaccaagactagttagaaagaaaaatctccatccacatgcaagatgt 684

                                                                       
Query: 485 gtcagcatccagataatggcactagacccaagcagaaggcagaaagaaagtcagattgca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtcagcatccagataatggcactagacccaagcagaaggcagaaagaaagtcagattgca 744

                                                                       
Query: 545 ctgacagacagtatgaacttgagggctttcataagaatgttgctactctaaagtcgtaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgacagacagtatgaacttgagggctttcataagaatgttgctactctaaagtcgtaaa 804

                                                      
Query: 605 cactttaggcagttatttattcactacctggagaaagtgtaga 647
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cactttaggcagttatttattcactacctggagaaagtgtaga 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)