Query= MSMg01no293_f06.b1 MSMg01no293_f06.b1 CHROMAT_FILE:
MSMg01no293_f06.b1 PHD_FILE: MSMg01no293_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:42 2005
(717 letters)
>mm_chr6_53575136_53576252
Length = 1117
Score = 1355 bits (701), Expect = 0.0
Identities = 710/713 (99%)
Strand = Plus / Plus
Query: 5 gaattcacccctggcatgttaaaagcaggtttgtcactagcagactctgccaatggccac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacccctggcatgttaaaagcaggtttgtcactagcagactctgccaatggccac 264
Query: 65 ttcccttctccctggcattttagttcagctgggaatgtctaccattgagatctcaggtcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcccttctccctggcattttagttcagctgggaatgtctaccattgagatctcaggtcc 324
Query: 125 cctggcagccacgaggccttccatggattatgctggtccttgtatgaacatcaccaaatc 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctggcagcctcgaggccttccatggattatgctggtccttgtatgaacatcaccaaatc 384
Query: 185 tcagacagccttctgaagaaaggttccaggttaacccaggaaagatggacttaaaaggag 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 tcagacagccttctgaagaaaggttccaggttaacccaggaaagatggactcaaaaggag 444
Query: 245 gggagggaatttgctaaacagcctatacagtgtacagggagttcagtgttcagcaggttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggagggaatttgctaaacagcctatacagtgtacagggagttcagtgttcagcaggttt 504
Query: 305 tcagaaactgtgtggtatcatgaatgaaatatgtggcaaagcagttttccatacttccat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcagaaactgtgtggtatcatgaatgaaatatgtggcaaagcagttttccatacttccat 564
Query: 365 tgctaatctcctttaaaaggacttgctagcatttacttccttatctcttccagtagaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctaatctcctttaaaaggacttgctagcatttacttccttatctcttccagtagaaaa 624
Query: 425 ttcttcaatatacatagtccctggaaaacgaaagggcattaagggagatggcttacatgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcttcaatatacatagtccctggaaaacgaaagggcattaagggagatggcttacatgt 684
Query: 485 tggaagaaaaggaaaaattatcttaacgtcctgttgttatttgaaatgccatttcctcca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggaagaaaaggaaaaattatcttaacgtcctgttgttatttgaaatgccatttcctcca 744
Query: 545 tctctaaattttagttaaatgtgaatttactcacataaaagtagctcaatgatagatgca 604
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 745 tctctaaattttagttaaatgtgaatttactcacgtaaaagtagctcaatgatagatgca 804
Query: 605 gcccttctggctcttatgttcagcttctcagcatcacgagttcatatgaacatcttacct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcccttctggctcttatgttcagcttctcagcatcacgagttcatatgaacatcttacct 864
Query: 665 ggttgtgtgaggatttctacatgcttggcaactgaactggctcccatttgatt 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ggttgtgtgaggatttctacatgcttggcaactgaactggctcccatttgatt 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no293_f06.g1 MSMg01no293_f06.g1 CHROMAT_FILE:
MSMg01no293_f06.g1 PHD_FILE: MSMg01no293_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:42 2005
(657 letters)
>mm_chr6_53699481_53700542
Length = 1062
Score = 1226 bits (634), Expect = 0.0
Identities = 653/662 (98%), Gaps = 5/662 (0%)
Strand = Plus / Minus
Query: 1 atctatacagaacatgtccagacaagtattgcccaggcaacacctatttacagaacattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 atctatacagaacatgtccagacaagtattgcccaggcaacacctatttacagaacattt 968
Query: 61 atgttgtattggggatagtgagtaatctagaaatgatctaaagtatatgaaaagatgtgt 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 atgttatattggggatagtgagtaatctagaaatgatctaaagtatatgaaaagatgtgt 908
Query: 121 gtcaactatacacaaacactaggccattttacttaagagacttgatccctcccccaaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gtcaactatacacaaacactaggccattttacttaagagacttgatccctcccccaaccc 848
Query: 181 ccgtaccccgaagggcaacaaaacattcttcaattgtctccatacataccctgagagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ccgtaccccgaagggcaacaaaacattcttcaattgtctccatacataccctgagagctt 788
Query: 241 cctatatgttctcatttcttataagctccacctttatgtttactctccttcctagaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 cctatatgttctcatttcttataagctccacctttatgtttactctccttcctagaaaaa 728
Query: 301 agtcagctcttttacttttggttcatgccttccctgagcatggtttgttt-----ttttg 355
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 727 agtcagctcttttacttttggttcatgccttccctgagcatggtttgtttgttttttttt 668
Query: 356 ttttttttttactaatactgttaattatatattatgctaatttataccgactgttcagaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ttttttttttactaatactgttaattatatattatgctaatttataccgactgttcagaa 608
Query: 416 gtgggaacataaaccctgattggttcaatatttactggaagagtttctcttttccattca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtgggaacataaaccctgattggttcaatatttactggaagagtttctcttttccattca 548
Query: 476 gtctaatgtgaactcatatttcacattaagcgttttcctgttttcatttggagatgttgg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtctaatgtgaactcatatttcacattaagcgttttcctgttttcatttggagatgttgg 488
Query: 536 tatgtttgtgctttcagagatactgctgataaaatgtcagagggatacacttaaacatta 595
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 487 tatgtttgtgctttcagagatattgctgataaaatgtcagagggatacacttaaacatta 428
Query: 596 tttaacaaactgaccctaagagcttctatagaagactatgaaagatgacaaagtccgaca 655
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 427 tttaacaaactgaccctaagagcttctatagaagactatgaaagatgacaaagaccgaca 368
Query: 656 ta 657
||
Sbjct: 367 ta 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1062
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1052
Effective search space: 680644
Effective search space used: 680644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
