CGAGCCCCCACCGCCCTGCCGTCTTGGTGCGGCGCGCGGTGGGGCGAGTG
CCTGGCGCCACCACCAAAATAAAAGATCGGTTTTGGAAGCAGCGTGGTCC
CGCCGGTTTTCTCCTTCAGCCCTCTCGGGGTTCGCCCCGCGTCAGCACGG
GCCCAGTATGAAGCCCGCCGCTGGGGGAAAATCAATATAATTCNNNCCCG
GTAGGAATNNNNNTTGTAAATCAAAAAAAATTGGGGGGGCCGGCCTAAAA
ACGAAACTCCCCTAATAGGGGGGGAGAAGGAAACCCGGGGGGAAAAATCC
TTTAGGGGGGGTTAAACAAAAAAAACGGGGGGTTTGGAAAAGGGGCCCAA
AAAAAAAAAAAAAATTGGGGGGGGGGGGGGGGGAAAAAAAAATTTTGGCG
GCGGGCAAAAAGGGGGGGGGAAATAAACCCCCCCCCCACAAAAAAAAGAA
AAAAAACCCCCCCCCCGCGGGCGGGTGTTTGTATAAGAGATCTTTCCCCC
CCCAACAAGGAGGGGGGTTCTATCCCCAAAAAAAAAAAAAAAAATTCCTC
TCTAAAAAAAAAAAAAAAAAAAAGGGGCCCCCCCCCCACCTACAAGAGGA
GGGACTATATTTGTTTACACAAACCACCATACAAAACCAGACGCCCGTTT
GTCTGGTTTCTCTTTCGCCCGCACACCACACAACATTACTTAGTGGTTGG
GGGGGGGGGGCGGGGCTCTCTTTTTATCCCTACAGGCAGGGGAAGGGGGG
GGAGGGAGGGGCGCCCCCTCTTCCCCAATTTTTTTGGGTTGGTTTTGCCC
CCCCCCCCCCCCCCCCCCCCCCCCCTGTGAGAAATAAATTAAAGAAGGGA
GCCGGGGGGGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTACAACTTCATTTGTTCTTACATAAATTCCCAGGC
ATTGAAAGAAGCCATCAAGCAAGACAGTTTATTTAATGCATTTTCTACTT
GTATACTTCTTGACTCAGTAGAGGCTCCCCACAATCAGATAACAATCTAA
TTAGCTTCCAGAAGAATTTAACAACCAGCAATGGGATTAATATAATAACC
AAATCTTAGATGGAATTGTCTGCAGTTTTGTATTATTTTATTAGAAAATG
ATAACATTTCCGTAGCCAAATAAATGTGGTTTAACTGATGAAAGATAATA
ACTATTCTTTTTCAATACTAGGAAAAATTGACATTATAGTTAGTAAGAAA
AGGGATTCACACGATGAAGGCTGAGATATATGAATGGGCTGTGGGGTAGG
AGCGGGAGGGGTCACTTAAGTGGTGTTGGGTAATAGAGTTATCACTATAT
ATATTATCTTTCATCAGTTAATGTATATATATGTATATATATATGTGTGT
GTATATATATATATATATATATTCTAATGTTAGATTAAACATTCTACAAT
ACAATCTGATACTTTGCTATAGATAATGCAGTATACCATGATTGAATCAA
ACGTTTATAATATTACCACATCATTTCCCCATCATTTCTAAAGACAAACA
TTTGAGATGTATTCTCTTGGGCTGAAGCTGTACGTTTAT

Query= MSMg01no293_i13.g1 MSMg01no293_i13.g1 CHROMAT_FILE:
MSMg01no293_i13.g1 PHD_FILE: MSMg01no293_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:58 2005
         (557 letters)



>mm_chr6_45400056_45401014
          Length = 959

 Score =  907 bits (469), Expect = 0.0
 Identities = 539/567 (95%), Gaps = 10/567 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacaacttcatttgttcttacataaattcccaggcattgaaagaagccatcaagcaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctacaacttcatttgttcttacataaattcccaggcattgaaagaagccatcaagcaaga 599

                                                                       
Query: 61  cagtttatttaatgcattttctacttgtatacttcttgactcagtagaggctccccacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cagtttatttaatgcattttctacttgtatacttcttgactcagtagaggctccccacaa 539

                                                                       
Query: 121 tcagataacaatctaattagcttccagaagaatttaacaaccagcaatgggattaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcagataacaatctaattagcttccagaagaatttaacaaccagcaatgggattaatata 479

                                                                       
Query: 181 ataaccaaatcttagatggaattgtctgcagttttg-tattattttattagaaaatgata 239
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 478 ataaccaaatcttagatggaattgtctgcagttttgctattattttattagaaaatgata 419

                                                                       
Query: 240 acatttccgtagccaaataaatgtggtttaactgatgaaagataataactattctttttc 299
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 418 acatttccgtagccaaataaatgtggtttaactgataaaagataataactattcattttc 359

                                                                       
Query: 300 aatactagg-aaaaattgacattatagttagtaagaaaagggattcacacgatgaaggct 358
           ||||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 358 aatactaggaaaaaattgacattatagttagtaagaaaagggatttaaatgatgaaggct 299

                                                                       
Query: 359 gagatatatgaatgggctgtggggtaggagcgggaggggtcacttaagtggtgttgggta 418
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 298 gagatatatgaatgggctgtggggtaggagcgggaggggtcacttaaatggtgttgggta 239

                                                                       
Query: 419 atagagttatcactatatatattatctttcatcagttaatgtatatatatgtatata--- 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 238 atagagttatcactatatatattatctttcatcagttaatgtatatatatgtatatatgt 179

                                                                       
Query: 476 -----tatatgtgtgtgtatatatatatatatatatattctaatgttagattaaacattc 530
                | | ||||||||| | | | | | | | | ||||||| |||||||||||||||||
Sbjct: 178 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattctattgttagattaaacattc 119

                                      
Query: 531 tacaatacaatctgatactttgctata 557
           |||||||||||||||||||||||||||
Sbjct: 118 tacaatacaatctgatactttgctata 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 959
Length adjustment: 10
Effective length of query: 547
Effective length of database: 949
Effective search space:   519103
Effective search space used:   519103
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)