Query= MSMg01no295_p20.b1 MSMg01no295_p20.b1 CHROMAT_FILE:
MSMg01no295_p20.b1 PHD_FILE: MSMg01no295_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:04 2005
(320 letters)
>mm_chr6_51115181_51115896
Length = 716
Score = 522 bits (270), Expect = e-152
Identities = 304/318 (95%), Gaps = 8/318 (2%)
Strand = Plus / Plus
Query: 4 ggaattcaagaatccatttcccaccttttagataaaggtaggagtcacatacacaaatgc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagaatccatttcccaccttttagataaaggtaggagtcacatacacaaatgc 263
Query: 64 ttgaccaaaacctatctatggtaccgaattaaaactcattgtgttgcccctgctggaagt 123
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgaccaaaacctatctacggtacccaattaaaactcattgtgttgcccctgctggaagt 323
Query: 124 cagtgggtaggtaatttccactctctccaagaatgggtggtggatccagggtcttcccag 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 cagtgggtaggtaatttccactctctccaagaatgggtggtgaatccagggtcttcccag 383
Query: 184 gttgccagcactggccagctgagcaaacctaaaggttggggagccctgctcagcttcggg 243
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 384 gttgccagcactggccagctgagcaaacctaaaggttg-----ccctgctcagctccggg 438
Query: 244 gagcctgaaacc-ttctactttgaatgcagctgcttctctttcatggattctttctcaag 302
|||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 439 gagcctgaaaccgtt-tactttgaatgcagctgattctgtttcatggattctttctcaag 497
Query: 303 tctgtgtaa-ctgttcat 319
||||||||| ||||||||
Sbjct: 498 tctgtgtaaactgttcat 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 716
Length adjustment: 9
Effective length of query: 311
Effective length of database: 707
Effective search space: 219877
Effective search space used: 219877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_p20.g1 MSMg01no295_p20.g1 CHROMAT_FILE:
MSMg01no295_p20.g1 PHD_FILE: MSMg01no295_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:04 2005
(292 letters)
>mm_chr6_51279682_51280369
Length = 688
Score = 538 bits (278), Expect = e-157
Identities = 287/292 (98%), Gaps = 4/292 (1%)
Strand = Plus / Minus
Query: 1 actagacaatgttgagcagctctgcatgcctttcaagccacacaccccccattcattccc 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 488 actagacaatgttgagcagctctgcatgcctttcaagc----caccccccattcattccc 433
Query: 61 acccctaaccttatttcctaaagtcagctcttcaatgctgctggattcatctcttttctt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acccctaaccttatttcctagagtcagctcttcaatgctgctggattcatctcttttctt 373
Query: 121 tcagcctgggatccatttttctctttctcttttgctctatcttgccttttcttcattttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcagcctgggatccatttttctctttctcttttgctctatcttgccttttcttcattttt 313
Query: 181 ggtttttggatcaactccatcctgtgttcttttccctacccttagggtctgatttgaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggtttttggatcaactccatcctgtgttcttttccctacccttagggtctgatttgaagt 253
Query: 241 cctgtctcctggagggatgtgcaggctctcagcctctgtcactgtcttcttc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cctgtctcctggagggatgtgcaggctctcagcctctgtcactgtcttcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 688
Length adjustment: 9
Effective length of query: 283
Effective length of database: 679
Effective search space: 192157
Effective search space used: 192157
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
