BAC Information

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BAC

Clone NameMSMg01-296A05
Chromosome6 (Build37)6 (Build37)
Map Location 120,697,166 - 120,697,934120,697,166 - 120,697,792
singlet/doubletsingletsinglet
Overlap geneCecr2
Upstream geneErc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik
Downstream geneSlc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296A05.T7 (MSMg01no296_a05.b1)MSMg01-296A05.TJ (MSMg01no296_a05.g1)
ACCAG423740AG423741
length736756
length of high quality
(start - end)		660 (77 - 736)518 (76 - 593)
definitionCHROMAT_FILE: MSMg01no296_a05.b1 PHD_FILE: MSMg01no296_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:06 2005CHROMAT_FILE: MSMg01no296_a05.g1 PHD_FILE: MSMg01no296_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:06 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,697,166 - 120,697,934)(120,697,166 - 120,697,792)
sequence
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCATGCAGCGGCTATGCCTGTA
ACCCTAGCATGAAGGGTGGAAGCAGGATGCTTACTGAAAGTGTGAGGCTT
CGTGGTCTACATAGTGAGTCCCAGGCCACCCAGAACTGACTATATGGGGA
GACTCAAAAAAACTAGAGAGAGGGATCAGAACCACAGGACAGAACCACGG
GCAAAGGCAGGTGTGGATTCTTCACCTCAATTGGAAAAAGATTTGGAGAG
CTTTCAAGTTTGGGTCTAAAGATGATTTCAATCAATATTGCTGACCTCAT
ATTTACATAGATCTTTCTGCCTTTTTTTCCCAAGTGCTGGGATTAAAGGT
ATGCACCACAATACCTGCCACTATTTTTAAGACAATTCACTGTACCAGGC
ATAATGAGTGTGCTTGTAATCCTATCATTTAGGAAGTGGAAAAAGGGGAA
TTTGGAGTTTCTGTCTTTGCTAGATCCAATCTTTTGTGGCTTAATATTTC
TGTTTTAAAAATAAAAGGCTCTTTTTGAACATCTATTTACTGAGTTCTAG
TGGAGGGGAGTGTGTGTGCCACAGCATCATTGGGAGATGAGAGGATAACT
TGAGGGGGTCCTTTTTCTCCTACCATGTGGGCTGCCTGGGTTGAACTCAG
ATGGTCAGGCTTATTGTCCAGTGCCCTTACTCACTG

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCATGCAGCGGCTATGCCTGTAA
CCCTAGCATGAAGGGTGGAAGCAGGATGCTTACTGAAAGTGTGAGGCTTC
GTGGTCTACATAGTGAGTCCCAGGCCACCCAGAACTGACTATATGGGGAG
ACTCAAAAAAACTATAGAGAGGGATCAGAACCACAGGACAGAACCACGGG
CAAAGGCAGGTGTGGATTCTTCACCTCAATTGGAAAAAGATTTGGAGAGC
TTTCAAGTTTGGGTCTAAAGATGATTTCAATCAATATTGCTGACCTCATA
TTTACATAGATCTTTCTGCCTTTTTTTCCCAAGTGCTGGGATTAAAGGTA
TGCACCACAATACCTGGCACCATTTTTAAGACAATTCACTGTACCAGGCA
TAATGAGTGTGCTTGTAATCCTATCATTTAGGAAGTGGAAAAAGGGGAAT
TTGGAGTTTCTGTCTTTGCTAGATCCAATCTTTTGTGGCTTAATATTTCT
GTTTTAAAAATAAAAGGCTCTTTTTGAACATCTATTTACTGAGTTCTAGT
GGAGGGGAGTGTGTGTGCCACAGCATCATTGGGAGATGAGAGGATAACTT
GAGGGGGTCCTTTTTCTCCTACCATGTGGCCTGCCTGGGTTGAACTCACA
TGGTCACGCTTATTGTCCAGTGCCCTTACTCCCTGACAGTAACCTATGTA
TATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_a05.b1 MSMg01no296_a05.b1 CHROMAT_FILE:
MSMg01no296_a05.b1 PHD_FILE: MSMg01no296_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:06 2005
         (660 letters)



>mm_chr6_120697075_120698134
          Length = 1060

 Score =  994 bits (514), Expect = 0.0
 Identities = 652/770 (84%), Gaps = 111/770 (14%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccatgcagcggctatgcctgtaaccctagcatgaagggtggaagcaggatgcttactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctccatgcagcggctatgcctgtaaccctagcatgaagggtggaagcaggatgcttactg 151

                                                                       
Query: 61  aaagtgtgaggcttcgtggtctacatagtgagtcccaggccacccagaactgactatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aaagtgtgaggcttcgtggtctacatagtgagtcccaggccacccagaactgactatatg 211

                                                                       
Query: 121 gggagactcaaaaaaa-ctagagagagggatcagaaccacaggacagaaccacgggcaaa 179
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 212 gggagactcaaaaaaaactagagagagggatcagaaccacaggacagaaccatgggcaaa 271

                                                                       
Query: 180 ggcaggtgtggattcttcacctcaattggaaaaagatttggagagctttcaagtttgggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggcaggtgtggattcttcacctcaattggaaaaagatttggagagctttcaagtttgggt 331

                                                                       
Query: 240 ctaaagatgatttcaatcaatatt------------------------------------ 263
           ||||||||||||||||||||||||                                    
Sbjct: 332 ctaaagatgatttcaatcaatattactcagctgttactatccagtatgtttagcatatac 391

                                                                       
Query: 263 ------------------------------------------------------------ 263
                                                                       
Sbjct: 392 atgtatcctcctcctttgttgacacaaagtctcactctagttaggctggcctggaactca 451

                                                                       
Query: 264 -------------gctgacctcatatttacatagatctttctgcctttttttcccaagtg 310
                        |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 452 gtatgtagaccaggctgacctcatatttacatagatctttctgcctttttt-cccaagtg 510

                                                                       
Query: 311 ctgggattaaaggtatgcaccacaatacctgccactatttttaagacaattcactgtacc 370
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 511 ctgggattaaaggtatgtaccacaatacctggcactatttttaagacaattcactgtacc 570

                                                                       
Query: 371 aggcataatgagtgtgcttgtaatcctatcatttaggaagtggaaaaaggggaatttgga 430
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 571 aggcataatgagtgtgcttgtaatcctatcatttaagaagtggaaaaaggggaatttgga 630

                                                                       
Query: 431 gtttctgtctttgctagatccaatcttttgtggcttaatatttctgttttaaaaataaaa 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtttctgtctttgctagatccaatcttttgtggcttaatatttctgttttaaaaataaaa 690

                                                                       
Query: 491 ggctctttttgaacatctatttactgagttctagtggaggggagtgtgtgtgccacagca 550
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggctctttttgaacatttatttactgagttctagtggaggggagtgtgtgtgccacagca 750

                                                                       
Query: 551 tcattgggagatgagaggataacttgagggggtcctttttctcctaccatgtgggctgcc 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tcattgggagatgagaggataacttgagggggtcctttttctcctaccatgtgggctgcc 810

                                                             
Query: 611 tgggttgaactcagatggtcaggcttattgtccagtgcccttactcactg 660
           |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 811 tgggttgaactcagatggtcaggcttattgtcgagcgcccttactcactg 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no296_a05.g1 MSMg01no296_a05.g1 CHROMAT_FILE:
MSMg01no296_a05.g1 PHD_FILE: MSMg01no296_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:06 2005
         (518 letters)



>mm_chr6_120697075_120697992
          Length = 918

 Score =  727 bits (376), Expect = 0.0
 Identities = 511/628 (81%), Gaps = 111/628 (17%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccatgcagcggctatgcctgtaaccctagcatgaagggtggaagcaggatgcttactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctccatgcagcggctatgcctgtaaccctagcatgaagggtggaagcaggatgcttactg 151

                                                                       
Query: 61  aaagtgtgaggcttcgtggtctacatagtgagtcccaggccacccagaactgactatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aaagtgtgaggcttcgtggtctacatagtgagtcccaggccacccagaactgactatatg 211

                                                                       
Query: 121 gggagactcaaaaaaa-ctatagagagggatcagaaccacaggacagaaccacgggcaaa 179
           |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 212 gggagactcaaaaaaaactagagagagggatcagaaccacaggacagaaccatgggcaaa 271

                                                                       
Query: 180 ggcaggtgtggattcttcacctcaattggaaaaagatttggagagctttcaagtttgggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggcaggtgtggattcttcacctcaattggaaaaagatttggagagctttcaagtttgggt 331

                                                                       
Query: 240 ctaaagatgatttcaatcaatatt------------------------------------ 263
           ||||||||||||||||||||||||                                    
Sbjct: 332 ctaaagatgatttcaatcaatattactcagctgttactatccagtatgtttagcatatac 391

                                                                       
Query: 263 ------------------------------------------------------------ 263
                                                                       
Sbjct: 392 atgtatcctcctcctttgttgacacaaagtctcactctagttaggctggcctggaactca 451

                                                                       
Query: 264 -------------gctgacctcatatttacatagatctttctgcctttttttcccaagtg 310
                        |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 452 gtatgtagaccaggctgacctcatatttacatagatctttctgcctttttt-cccaagtg 510

                                                                       
Query: 311 ctgggattaaaggtatgcaccacaatacctggcaccatttttaagacaattcactgtacc 370
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 511 ctgggattaaaggtatgtaccacaatacctggcactatttttaagacaattcactgtacc 570

                                                                       
Query: 371 aggcataatgagtgtgcttgtaatcctatcatttaggaagtggaaaaaggggaatttgga 430
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 571 aggcataatgagtgtgcttgtaatcctatcatttaagaagtggaaaaaggggaatttgga 630

                                                                       
Query: 431 gtttctgtctttgctagatccaatcttttgtggcttaatatttctgttttaaaaataaaa 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtttctgtctttgctagatccaatcttttgtggcttaatatttctgttttaaaaataaaa 690

                                       
Query: 491 ggctctttttgaacatctatttactgag 518
           |||||||||||||||| |||||||||||
Sbjct: 691 ggctctttttgaacatttatttactgag 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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