BAC Information

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BAC

Clone NameMSMg01-296D16
Chromosome6 (Build37)
Map Location 126,279,951 - 126,479,541
singlet/doubletdoublet
Overlap geneLOC667427, LOC100043567
Upstream geneScnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
Downstream geneKcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296D16.T7 (MSMg01no296_d16.b1)MSMg01-296D16.TJ (MSMg01no296_d16.g1)
ACCAG423902AG423903
length742742
length of high quality
(start - end)
328 (46 - 373)191 (130 - 320)
definitionCHROMAT_FILE: MSMg01no296_d16.b1 PHD_FILE: MSMg01no296_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:22 2005CHROMAT_FILE: MSMg01no296_d16.g1 PHD_FILE: MSMg01no296_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,279,951 - 126,280,261)(126,479,352 - 126,479,541)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGAAATCAGCAGTAGTGGCCAAATTACAATTGACTTGGCTAAT
AATTTCAACTAGGCACACATGCCTGCTATGCACATGCACACGTGCATATA
ACACTCAAACCCCCCATGTAGGAGTCTTGTCATATGTGTCCATCATTGGG
AAGTTATCCAACAGAGAGAGTTGATTGGCATAAGCAGATTCCTTGGCAGT
GGTAGGTTGTGTCCATAGTCTAACGTGGTCATAGACAAAGGTCCCACATT
TCTATTTTTACTAATGAAATGATTTCACCTGGCAACCCTCTTCTGTTTGT
GTCTACCTATTTTTTTTTTCTTCACCTCTACTCTATCATTTATCTTTCAG
GCTTTCACTTCTGAACCCCATTCACTAATACAAGATTCTGTCTTCCAGCG
TGAGGTTCAGTATGTTAGCAATCTCATGATCGAAGCCTGGCAAGACAGGC
AGGGCAGCTTCAGGAACCAGGTGACTTCCTTCGAGTCCAGCATTTGATGG
TATTTTGTCATCGCAGTCATGGAGGCAAAAAGTCAGCAACAGTCTGAAAA
TCATAAACAGCAACAGTCTGGTCCGTTCAGTTTTGTTTGTCTAAGCACTG
ATTCGGGATCATTAAGCCCAGTGACTGCTGTGCAGATGACTTTCTGCCAT
GCTGCCTATCAGCAATATTTTCTTCCTCAAAGATGGCTACCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATGTAAAGGGAGCCC
CTGACCTATGTCTGTCATGTTCCTCCCGATTAGTGTCTTGACTTAAGACT
GAGGGCCACAGTGCAAGCTCCAGTCTTGCTAAGGAGAGTTCAGAGGGAGG
CTCAGCAGGCTCGGCAATGGTGGTCCTCTTTGGCAACATTTATGAAAGGG
ACCAGTTTGAGCATGTTTTAGGTGTTGTAGGCTGAGGTAAAAATCTGTCT
TACTGCAGGTTTATATATATTTATTTTTAATATAAACCTTTACAAGTGTC
AAATCTGTCTTTGCTTGAGNTTTCCNANAACCTTGCCACTTTGGTTTAGT
TGTCATGGTGTTTTGCCTCCCGCAAAATTTACGTTACATGATGCCCGGAG
CAGTCCCTCTGATTTCCCTGTATTCAGCTTTACATATCACCAATGCAAGG
CCCCGATGTGGAGAGGGCAGTGCTCTAGCAGTGCACCGCTTAGAAAACTT
GTTTGGAGAGACCTAGCTTTCTCCTGACTCTTAGTCTAAGTCCGTTTTGC
CCACCTGTCTGTGGGGCTGATGGATATGATGTCTTACTGAACGTCCTATT
CCTTTGTTTTCCCTAAGCTTTCTGTGTCACCCTCGCTACCACTGAAATTA
GGGAACTCTTCTTTCGGCTCCTTGTATTCTTCCCATTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_d16.b1 MSMg01no296_d16.b1 CHROMAT_FILE:
MSMg01no296_d16.b1 PHD_FILE: MSMg01no296_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:22 2005
         (328 letters)



>mm_chr6_126279747_126280474
          Length = 728

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgaaatcagcagtagtggccaaattacaattgacttggctaataatttcaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgaaatcagcagtagtggccaaattacaattgacttggctaataatttcaac 264

                                                                       
Query: 65  taggcacacatgcctgctatgcacatgcacacgtgcatataacactcaaaccccccatgt 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taggcacacatgcatgctatgcacatgcacacgtgcatataacactcaaaccccccatgt 324

                                                                       
Query: 125 aggagtcttgtcatatgtgtccatcattgggaagttatccaacagagagagttgattggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagtcttgtcatatgtgtccatcattgggaagttatccaacagagagagttgattggc 384

                                                                       
Query: 185 ataagcagattccttggcagtggtaggttgtgtccatagtctaacgtggtcatagacaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataagcagattccttggcagtggtaggttgtgtccatagtctaacgtggtcatagacaaa 444

                                                                       
Query: 245 ggtcccacatttctatttttactaatgaaatgatttcacctggcaaccctcttctgtttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtcccacatttctatttttactaatgaaatgatttcacctggcaaccctcttctgtttg 504

                      
Query: 305 tgtctacctat 315
           |||||||||||
Sbjct: 505 tgtctacctat 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no296_d16.g1 MSMg01no296_d16.g1 CHROMAT_FILE:
MSMg01no296_d16.g1 PHD_FILE: MSMg01no296_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:22 2005
         (191 letters)



>mm_chr6_126479152_126479742
          Length = 591

 Score =  352 bits (182), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagtgtcttgacttaagactgagggccacagtgcaagctccagtcttgctaaggagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttagtgtcttgacttaagactgagggccacagtgcaagctccagtcttgctaaggagagt 331

                                                                       
Query: 61  tcagagggaggctcagcaggctcggcaatggtggtcctctttggcaacatttatgaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcagagggaggctcagcaggctcggcaatggtggtcctctttggcaacatttatgaaagg 271

                                                                       
Query: 121 gaccagtttgagcatgttttaggtgttgtaggctgaggtaaaaatctgtcttactgcagg 180
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 270 gaccagtttgagcatgttttaggtgttgtaggctgaggcaaaaatctgtcttactgtagg 211

                     
Query: 181 tttatatata 190
           ||||||||||
Sbjct: 210 tttatatata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)