BAC Information

Click to search

BAC

Clone NameMSMg01-297O11
Chromosome6 (Build37)
Map Location 90,351,862 - 90,352,130
singlet/doubletsinglet
Overlap geneZxdc
Upstream geneChchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1
Downstream geneCcdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297O11.T7 (MSMg01no297_o11.b1)MSMg01-297O11.TJ (MSMg01no297_o11.g1)
ACCAG425101AG425102
length738737
length of high quality
(start - end)
269 (49 - 317)568 (73 - 640)
definitionCHROMAT_FILE: MSMg01no297_o11.b1 PHD_FILE: MSMg01no297_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:27 2005CHROMAT_FILE: MSMg01no297_o11.g1 PHD_FILE: MSMg01no297_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGGATCCGCGGAA
TTCAGTCTTCATTGGCTCAAGACTGCTGTCACTCAAGGTCCCGCAGGTTG
ATAGTACTTCCTGGTACCTGTGCAGTCTCCAGTCCAGCAAAACCTCCAGG
TGCTGGAAGCACCTCCTGTAAAACCAAGCAGAGAAGTAGAGGGTAGGGCA
AGAAGAGAAGAGGAAGGCTCAGCAGAGATGTGGCCCACACCTTATGTTCT
TCAAAGAACAATGTGACAGATAATGGTGGCATAAGCTTTTGATCCCAGTA
CAAGGAAGGCAGAGTCATGTTTTATCTCTGTGAGTTCCAGGCCAGCCAGT
GTAGGCTACAAAGGGGGACCCCATCTTACACAAAGGAAGAAAGGAAGGAA
GGAAGAAAGAAAAAGATGTATAGAAACACCAAGAACTAAAACAGTGATAT
TTTTCACAGATACTTTTCTATAGGCCTACTGATGGCTCCATACATATTCA
AACACCCATGTACTCTTCTGTTAAAAAAACGGCTCATTCTTTCTCGTACT
CAGCATGCATTGCGCAGGCTGCCCAGGGAGATGGCCACGGTTGCATAGCC
ATCACTCTCCTGCTGGAATCCAGTCTGCAGTGCACAGGTTGCAGGTCACT
GGTAGTCTGTTATCTTCCCTGCCTCCCTCACAGGCTCTTGCTCTCTTTCC
GCCACCCGACACTTTTTCTCCCTTTTCCTTTCAGTTTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCAGTTTTAA
TGGAGGTATTTGAATTTCTGGAGTTCTTTTTCTTGAGCTCTTTGTATGTA
TTGGATATTAGTCCCCTATCAGATTTAAGATTGGTAAAAATTCTTTCCCA
ATCTGTTGGTGGCCTTTCTGTCTTATTGACAGTATCTTTTGCCCTACAGA
AGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATTGACACAGC
ACAGACCATTCCTATTCTTTTTAGGAATTTTTCCCCTGTGTCCATATCTT
CAAGGCTTTTCCACACTTTCTCCTCTATAAATTTCAGTGTCTCTGATTTT
ATGTGGAGCTCTTTGATCCACTTAGACGTGAGCTTTGTACAAGGAGATAA
GAATGGATCAATTCTCATTCTTGTACTTGATAACCGCCAGTTGTGCCAGG
ACCATTTGTTGAAAATGCTGTCCTTTTTCCACTGGATGGTTTTAGCTCCC
TTGTCAAAGATTAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTC
AATTCTATTCCATTAATCTACCTGTCTGTCGTTGTACCAGTACCATGCAG
TTTTTATCCCAATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATT
CCCCCAGAGGTTCTTTTATTGTTGAGAATACGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_o11.b1 MSMg01no297_o11.b1 CHROMAT_FILE:
MSMg01no297_o11.b1 PHD_FILE: MSMg01no297_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:27 2005
         (269 letters)



>mm_chr6_90351662_90352330
          Length = 669

 Score =  520 bits (269), Expect = e-152
 Identities = 269/269 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcagtcttcattggctcaagactgctgtcactcaaggtcccgcaggttgatagtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aattcagtcttcattggctcaagactgctgtcactcaaggtcccgcaggttgatagtact 410

                                                                       
Query: 61  tcctggtacctgtgcagtctccagtccagcaaaacctccaggtgctggaagcacctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcctggtacctgtgcagtctccagtccagcaaaacctccaggtgctggaagcacctcctg 350

                                                                       
Query: 121 taaaaccaagcagagaagtagagggtagggcaagaagagaagaggaaggctcagcagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taaaaccaagcagagaagtagagggtagggcaagaagagaagaggaaggctcagcagaga 290

                                                                       
Query: 181 tgtggcccacaccttatgttcttcaaagaacaatgtgacagataatggtggcataagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgtggcccacaccttatgttcttcaaagaacaatgtgacagataatggtggcataagctt 230

                                        
Query: 241 ttgatcccagtacaaggaaggcagagtca 269
           |||||||||||||||||||||||||||||
Sbjct: 229 ttgatcccagtacaaggaaggcagagtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)