Query= MSMg01no298_c09.b1 MSMg01no298_c09.b1 CHROMAT_FILE:
MSMg01no298_c09.b1 PHD_FILE: MSMg01no298_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:46 2005
(692 letters)
>mm_chr6_12825539_12826630
Length = 1092
Score = 861 bits (445), Expect = 0.0
Identities = 482/495 (97%), Gaps = 4/495 (0%)
Strand = Plus / Minus
Query: 200 gagtttctctgaaactctttgcctcgtgagtgttcccaggcctctctgcctgccaagcaa 259
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1092 gagtttctctgaaactctttgccttgtgagtgttcccaggcctctctgcctgccaagcaa 1033
Query: 260 acatcactggagagtgcatagcaaagcaacattcctctgtgggtttttgtggttttctgt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 acatcactggagagtgcatagcaaagcaacattcctctgtgggtttttgtggttttctgt 973
Query: 320 cctcacttccctggatgatagactctaactctttcctcttcttgtggactttggtcagtg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 cctcacttccctggatgatagactctaactctttcctcttcttgtggactttggtcagtg 913
Query: 380 ttttatcataatgatagaaagaaactagaaatgtttaatttgtactgtgtgaaaatttcc 439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 912 ttttatcataatgatagaaagaaactagaaatgtttaatttgtactgtgtgaaaatctcc 853
Query: 440 ttactagaccagacacagttatttcaactgtaatgtttgattttccgattttaagatttc 499
||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||
Sbjct: 852 ttactagaccagacacagttatttcaagtgtaatgtttaattttctgattttaagatttc 793
Query: 500 ttcttattattaatagtgtagcaacatactcaccactatatatttaatattatttcttta 559
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttattattattaatagtgtagcaacatactcaccactatatatttaatattatttcttta 733
Query: 560 tctctggtctatagggatactaaacatatgccttagtagctaat-tacgttttgaga-gg 617
||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||| ||
Sbjct: 732 tctctggtctatagggataataaacat--gccttagtaactaaagtacgttttgagaagg 675
Query: 618 attactgtagcatgaactctcctctctcttactcctttttctctccttggatttcagtga 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 attactgtagcatgaactctcctctctcttactcctttttctctccttggatttcagtga 615
Query: 678 agtattatttaagtc 692
|||||||||||||||
Sbjct: 614 agtattatttaagtc 600
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_c09.g1 MSMg01no298_c09.g1 CHROMAT_FILE:
MSMg01no298_c09.g1 PHD_FILE: MSMg01no298_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:46 2005
(666 letters)
>mm_chr6_12791071_12792135
Length = 1065
Score = 1218 bits (630), Expect = 0.0
Identities = 658/668 (98%), Gaps = 5/668 (0%)
Strand = Plus / Plus
Query: 1 tcaaaaatcatttatggatccagcaagatactggggaaattagaggtcccctcttggaga 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaaataatttatggatccagcaagatactggggaaattagaggtcccctcttggaga 260
Query: 61 tcttaatcttgttaagaaatgaaaatttaagaatgaactcaaatggaagctcaggtaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaatcttgttaagaaatgaaaatttaagaatgaactcaaatggaagctcaggtaact 320
Query: 121 gactggaagagaaaaaaaaaagagaaactgtatgaactcagtgtgcatggacgtcagcca 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactggaagag--aaaaaaaagagaaactgtatgaactcagtgtgcatggacgtcagcca 378
Query: 181 tacaatggacacatagctgcatgctaggggcaggagatttaatgatagagtgcaaccttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tacaatggacacatagctgcatgctaggggcaggagatttaatgatagagtgcaaccttg 438
Query: 241 aatgttagttaagaccaatgtgctggagatggaaagcgaaaaggaaaagttaattttttt 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 439 aatgttagttaagaccaatgtgctggagatggaaagtgaaaaggaaaagttaattttttt 498
Query: 301 tt-t-aataactcagaaaaactggcagaattgccatgttatctttccacaacattgtaca 358
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttctgaataactcagaaaaactggcagaattgccatgttatctttccacaacattgtaca 558
Query: 359 atatgttaggaatgggtattcctgtagtgaaatcacattatcctattaaaggggtaatta 418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 559 atatgttaggaatgggtattcctgtagtgaaatcatattatcctattaaaggggtaatta 618
Query: 419 ttcctcctatctccttagcatgactgatgatggtattgacatcctgatgtttcttgccac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttcctcctatctccttagcatgactgatgatggtattgacatcctgatgtttcttgccac 678
Query: 479 ataattgaccagcccaactcaaaaactacaaatccactaaggccaaatatttctttctct 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ataattgaccagcccgactcaaaaactacaaatccactaaggccaaatatttctttctct 738
Query: 539 cgtcaaaagaattttttttcttaacaggctctcaatatcaatatatatgtatgcaaaaag 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cgtcaaaagaattttttttcttaacaggctctcaatatcaatatatatgtatgcaaaaa- 797
Query: 599 atatatcaattattttccaaatactattttgctccagaacactgaaaaatctaatgtaca 658
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 798 atatatcaattattttccaaatattattttgctccagaacactgaaaaatctaatgtaca 857
Query: 659 taatagac 666
||||||||
Sbjct: 858 taatagac 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
