BAC Information

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BAC

Clone NameMSMg01-298J18
Chromosome6 (Build37)
Map Location 42,764,068 - 42,764,725
singlet/doubletsinglet
Overlap genenone
Upstream genePip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1
Downstream geneOlfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298J18.T7 (MSMg01no298_j18.b1)MSMg01-298J18.TJ (MSMg01no298_j18.g1)
ACCAG425617AG425618
length741744
length of high quality
(start - end)		645 (45 - 689)662 (76 - 737)
definitionCHROMAT_FILE: MSMg01no298_j18.b1 PHD_FILE: MSMg01no298_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:20 2005CHROMAT_FILE: MSMg01no298_j18.g1 PHD_FILE: MSMg01no298_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATGCCCACTGAATGGAAGAGAAACACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGACCTGCAAATCAAAACAACCCTGAGATTC
CATCTCAAACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAATGCTTCCTCCATTGTTGGTGG
GATTGCAAACTTGTACAACCACTCTGGAAATCAGTCTAGCAGTTCCTTAG
AAAATTGGACATAGTACTACCAGAGGATCCTGCAATACCTCTCCTGGGCA
TATATCAAGAAGATGTCCCAACCGGTATGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
TCCCTCAATAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACTTGGAGGACATCATCCTGAGTGAGGTAACCCAATCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACTT
AGGATACCCAAGATATAAGATACAATTTGCTAAACGCATGACACTCTAGA
AGAATAAAGACCAAAGTGTGGACACTGTGCCCCTTCTTAGA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGACCCTTGGCTGCACAAGATGCTG
AGAACAAAGCCCCATTGAGAAGGCAGCCCTAAAAGTGACACTTATGACAC
CATTTTAAGGTTTGGGAATGCTGCATAAAATGGTACAGAGAAAAAATAAA
AGCTGAAACATAAGAAGACAGGCTACAAATGCTATTTTCTAAGTAAAATA
TGAGCATAGTGACCAAGAACTCACAGTAGGACTCAAGAACTGCACCAAGC
GCTACCGCGTTCACAAAGTCAGACTTATCTTTAGGTCGGCTATGTGTGCA
GAGGAGGCCCAAGAGCCCTACTGTATACAAGTGAATTACTTACAACTAAC
AGTGTTTTGGGGAATATAGCACCTACTGATAAGCCCTCAAACTTTAATGA
ATAATTCCAAACTCATGGCCACACAGAGAACCCTAATTAAACTCTGTGGG
ACACAAAATGAAATCCAAAGTCATGATCATGGGAACCAGGTCTATCGGGG
GTAAGAGGGAGCAAAGAGATGGAGTAGAGGCAGTGCTTAGTATGTTTTGT
ATACTTGTATGAAACTGTCAAAGATAAAAATATGGTAATAAAAATGTAAA
AAGGAATAGTTAGTTGTTCATTTATTTATACTGGTTATGCTACTACAACT
TGGAATCAAAAGGGTTAAACTATAACAGCAACCAAACAAGTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_j18.g1 MSMg01no298_j18.g1 CHROMAT_FILE:
MSMg01no298_j18.g1 PHD_FILE: MSMg01no298_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:20 2005
         (662 letters)



>mm_chr6_42763664_42764725
          Length = 1062

 Score = 1265 bits (654), Expect = 0.0
 Identities = 657/658 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    ccttggctgcacaagatgctgagaacaaagccccattgagaaggcagccctaaaagtgac 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 ccttggctgcacaagatgctgagaacaaagccccattgagaaggcagccctaaaagtgac 1003

                                                                        
Query: 65   acttatgacaccattttaaggtttgggaatgctgcataaaatggtacagagaaaaaataa 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 acttatgacaccattttaaggtttgggaatgctgcataaaatggtacagagaaaaaataa 943

                                                                        
Query: 125  aagctgaaacataagaagacaggctacaaatgctattttctaagtaaaatatgagcatag 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 942  aagctgaaacataagaagacaggctacaaatgctattttctaagtaaaatataagcatag 883

                                                                        
Query: 185  tgaccaagaactcacagtaggactcaagaactgcaccaagcgctaccgcgttcacaaagt 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  tgaccaagaactcacagtaggactcaagaactgcaccaagcgctaccgcgttcacaaagt 823

                                                                        
Query: 245  cagacttatctttaggtcggctatgtgtgcagaggaggcccaagagccctactgtataca 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  cagacttatctttaggtcggctatgtgtgcagaggaggcccaagagccctactgtataca 763

                                                                        
Query: 305  agtgaattacttacaactaacagtgttttggggaatatagcacctactgataagccctca 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  agtgaattacttacaactaacagtgttttggggaatatagcacctactgataagccctca 703

                                                                        
Query: 365  aactttaatgaataattccaaactcatggccacacagagaaccctaattaaactctgtgg 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702  aactttaatgaataattccaaactcatggccacacagagaaccctaattaaactctgtgg 643

                                                                        
Query: 425  gacacaaaatgaaatccaaagtcatgatcatgggaaccaggtctatcgggggtaagaggg 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  gacacaaaatgaaatccaaagtcatgatcatgggaaccaggtctatcgggggtaagaggg 583

                                                                        
Query: 485  agcaaagagatggagtagaggcagtgcttagtatgttttgtatacttgtatgaaactgtc 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582  agcaaagagatggagtagaggcagtgcttagtatgttttgtatacttgtatgaaactgtc 523

                                                                        
Query: 545  aaagataaaaatatggtaataaaaatgtaaaaaggaatagttagttgttcatttatttat 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522  aaagataaaaatatggtaataaaaatgtaaaaaggaatagttagttgttcatttatttat 463

                                                                      
Query: 605  actggttatgctactacaacttggaatcaaaagggttaaactataacagcaaccaaac 662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462  actggttatgctactacaacttggaatcaaaagggttaaactataacagcaaccaaac 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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