Query= MSMg01no299_a05.b1 MSMg01no299_a05.b1 CHROMAT_FILE:
MSMg01no299_a05.b1 PHD_FILE: MSMg01no299_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:49 2005
(678 letters)
>mm_chr6_99788947_99790024
Length = 1078
Score = 1203 bits (622), Expect = 0.0
Identities = 661/674 (98%)
Strand = Plus / Minus
Query: 5 gaattctcagctcctcctataccatgcttgcctggatgctgccaagttcctgtcctgatg 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 693 gaattctcagctcctcctataccatgcttgcctggatgctgccaagttcctgtcttgatg 634
Query: 65 ataatggactgaacctctgaacctgtaagccagccccaattaaatgttgttcttatggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ataatggactgaacctctgaacctgtaagccagccccaattaaatgttgttcttatggga 574
Query: 125 gttgccttggtcatggtgtctgttcacagcagtaaaaccctatctaagacaaggtcctcc 184
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 573 gttgccttggtcatggtgtctgctcacagcagtaaaaccctacctaagacaaggtcctcc 514
Query: 185 ttttatctcatttgttctttcaattgccgcccccagaagacctgagagaatgaacctcca 244
||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct: 513 ttttatctcatttgttctttcaattgctgcccccagaagacctgtgggaatgaacctcca 454
Query: 245 ctgtgcctcacggcctcaactctcttcagaactctgtcatgttgtcaacttatggtgttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctgtgcctcacggcctcaactctcttcagaactctgtcatgttgtcaacttatggtgttt 394
Query: 305 tttggtctttctttttctttctttcttttttttaagatttatttatttattatgagtaca 364
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 393 tttggtctttctttttctttctttattttttttaagatttatttatttattatgagtaca 334
Query: 365 ctacagctgtcttcagacacaccagaatcgggcattggatcccatttcagatggttgtga 424
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 333 ctacagctgtcttcagacataccagaagagggcattggatcccatttcagatggttgtga 274
Query: 425 gccaccatgtggttgttgggaattgaactcaggacctctggaagagcagacagtgtcatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 273 gccaccatgtggttgttgggaattgaactcaggacctctggaagagcagacagtgccatc 214
Query: 485 tctccagcccatcttatagtgttaataactcctaataaacctcttatccaatagatgtct 544
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tctccagcccatgttatagtgttaataactcctaataaacctcttatccaatagatgtct 154
Query: 545 gcctcagtgtcccttatatataaataatatttaatattattaacaatagcataaacatgt 604
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 153 gcctcagtgtcccttatatataaataatatttaatattattaataatagcataaacatgt 94
Query: 605 ataagtagagacaatgaaagtaacaatgtaggggataggatctgtgcatatgacagatgc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ataagtagagacaatgaaagtaacaatgtaggggataggatctgtgcatatgacagatgc 34
Query: 665 tttttggtcccagg 678
||||||||||||||
Sbjct: 33 tttttggtcccagg 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_a05.g1 MSMg01no299_a05.g1 CHROMAT_FILE:
MSMg01no299_a05.g1 PHD_FILE: MSMg01no299_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:49 2005
(346 letters)
>mm_chr6_99623223_99623967
Length = 745
Score = 561 bits (290), Expect = e-164
Identities = 329/342 (96%), Gaps = 3/342 (0%)
Strand = Plus / Plus
Query: 1 atta-ccaactgatgggcagtcaagaagtaaagaaaaataaagtaggatttaaaatgaag 59
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacccaactgataggcagtcaagaagtaaagaaaaataaagtaggatttaaaatgaag 260
Query: 60 tcacacagaaggggggggggagagagtgagagagaaagatttgtgtagcattttcaggac 119
|||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tcacacagaagggggggggg-g-gagtgagaaagaaagatttgtgtagcattttcaggac 318
Query: 120 agtaacttccttgctaaatggctaaatgttaattaggagcattgaagatgctgtcagaca 179
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 319 agtaacttccttgctaaatggctaaatgttaattaggaacattgaagatgctgtcagacc 378
Query: 180 ctcatcaggaggaatctctatagttattaagtcccctgaactaggacaaatatcagtagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctcatcaggaggaatctctatagttattaagtcccctgaactaggacaaatatcagtagg 438
Query: 240 aatgatttattcagagggcctgatgatgtctcacctgcttttactttcatttgttacaca 299
|||||| | |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 439 aatgatagaaacagagggcctgatgatgtctcatttgcttttactttcatttgttacaca 498
Query: 300 gcatatacatactgttacattgtatgctgtagcattactctc 341
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcatatacatactgttacattgtatgctgtagcattactctc 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space: 248032
Effective search space used: 248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
