BAC Information

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BAC

Clone NameMSMg01-299H22
Chromosome6 (Build37)
Map Location 21,121,948 - 21,122,219
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299H22.T7 (MSMg01no299_h22.b1)MSMg01-299H22.TJ (MSMg01no299_h22.g1)
ACCAG426251AG426252
length751750
length of high quality
(start - end)
272 (376 - 647)689 (62 - 750)
definitionCHROMAT_FILE: MSMg01no299_h22.b1 PHD_FILE: MSMg01no299_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:26 2005CHROMAT_FILE: MSMg01no299_h22.g1 PHD_FILE: MSMg01no299_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTAAACGACTCACTATTTTTCCAAAACCGGCGGAATTCTATGAAATA
TTTCAAAAAAAGCCTGAAACATAAATGTTAGAGTAACAACCTCAAATTTC
ACATTTTACATATTACCCCAAATACTTCTTGCTCATCTTCTCCCTGAGAA
TAACATTTGTTACAATGTGATACAATAGTAAATTAAATATAATCTTATAC
TCTAATAATGACAATGTAATGTAATGGTGACAGTAAACTGAATAATAAAG
ATAAAAATAGTGGATAAATAGCATGAAACATATATACTAAGAAGAGAGAG
AGGTAGAGAGTGAGTGATAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAA
GATATGTGAGAGCCGCACCCAAAAGAGATGCAGAGTCACTTTTAGCTGGA
GTTTTCAGAGAGGACTCTTTATGAATCTGCCAATCAAACAGAGGGCTTGG
AAAGGTGAGAGGAAAGTAGAGAATGAGTCATGTGGATTTGGAAAAAGCAT
TTCAGACCAAGATAAGAGAAAATGCCAAGGCCAGGAGATAAAAGCTTTAT
TAGTGTTTTGGGGCAAGAGCAACAAGACCTTTCTGCTTGAAATGTAGTTA
GAAAAGAAAAAATGCTATAGCATGAAGCCCAAGGGGTAGGGAAGTTCCAG
ACCAATGTTTATTGCTATTTCAAGTACTTAACTTTCATTATGAGCATGTT
CAGGGAACACCAGCAGCAGAGTGGGTGAGCTCACACACACACACACATAC
A
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTACAGTTAATAAACACTTACAACAAAGTGCCTGGATAC
AAAATTAAAATAGAGGAATCAGTTGTCCTCCTGTATTCAACCTACAAATG
GGTCAAAAAAGAAATTATGGAAATAACATCCTTTACAATAGTCACAAAAA
TATGCAATATCTTGGTGTAATTATAACCAAGCCAGTTAATGACCTATAGA
ACAAGAAATTCAAGGAGCTGAAGAAGGAAACTGAGGAAGATATGAGAAGA
TGGGAAGATGGAAAGATCTCCCATACTCATGGATCTGTAGGATTAACATG
GGGAAAATGAACATCTTACCAAAAACAATTTACATATTCAAAGCAATTTC
TACCAAAATTCCAACACAAATCTTTATATACCTTGACAGAGTAACTCTTT
GGAAAATAATCCAGGACAGCTAAAACAATACTAAACTATAGAAGAACTTC
TGCAGTTGTCACAATCCCTGACTTCAAGCTGTGCTAAAGAGCAATAATAA
TAAAAACTGCATGCTATTGGTATAAGACTCANAGACCCTGAAATAAACCC
ACACACAAATGCAGACTTGCTCTTTGACAAAGAAGGCAAAACCATACAAT
GAAAGAAGAAAGCATCTTTAACAAATGGTGCTGGTCTAACTGGATGTTTA
TAGGTAGAAGAATGCAAATAGATCCCCATCTATCACTCTGCACAAAACTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_h22.b1 MSMg01no299_h22.b1 CHROMAT_FILE:
MSMg01no299_h22.b1 PHD_FILE: MSMg01no299_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:26 2005
         (272 letters)



>mm_chr6_21121748_21122419
          Length = 672

 Score =  526 bits (272), Expect = e-154
 Identities = 272/272 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgcagagtcacttttagctggagttttcagagaggactctttatgaatctgccaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agatgcagagtcacttttagctggagttttcagagaggactctttatgaatctgccaatc 413

                                                                       
Query: 61  aaacagagggcttggaaaggtgagaggaaagtagagaatgagtcatgtggatttggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaacagagggcttggaaaggtgagaggaaagtagagaatgagtcatgtggatttggaaaa 353

                                                                       
Query: 121 agcatttcagaccaagataagagaaaatgccaaggccaggagataaaagctttattagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agcatttcagaccaagataagagaaaatgccaaggccaggagataaaagctttattagtg 293

                                                                       
Query: 181 ttttggggcaagagcaacaagacctttctgcttgaaatgtagttagaaaagaaaaaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttttggggcaagagcaacaagacctttctgcttgaaatgtagttagaaaagaaaaaatgc 233

                                           
Query: 241 tatagcatgaagcccaaggggtagggaagttc 272
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tatagcatgaagcccaaggggtagggaagttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)