Query= MSMg01no299_j11.b1 MSMg01no299_j11.b1 CHROMAT_FILE:
MSMg01no299_j11.b1 PHD_FILE: MSMg01no299_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:33 2005
(323 letters)
>mm_chr6_129326618_129327338
Length = 721
Score = 466 bits (241), Expect = e-136
Identities = 278/303 (91%), Gaps = 22/303 (7%)
Strand = Plus / Plus
Query: 20 aatttacccagtgcaaattacattagaacttatagattatttagaatttatagattattt 79
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aatttacccagtgcaaattacattagaacttatagattattt------------------ 279
Query: 80 ttatatttcctattttaataaaacaagaaaaataaagtcaaactatgttaaaa-gttgtg 138
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 280 ttatatttcctattttaataaaacaagaaaaataaagtcaaactatgtaaaaaagttgtg 339
Query: 139 ggattttactatgtaatgtgtaattatgcttgctttcatacatacttgagaagacaagat 198
| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 340 gaattttactatgtaatgtgtaattatgcttgctttcatacattcttgaga---caagat 396
Query: 199 aagtgtctgagacaggaaatgaatgatttactgatgtgatcaggtagttgggaaattgtg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aagtgtctgagacaggaaatgaatgatttactgatgtgatcaggtagttgggaaattgtg 456
Query: 259 tccaggtttttggctcaactttaatgatccttaaatgatgtctttgaaaattatgcaagc 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tccaggtttttggctcaactttaatgatccttaaatgatgtctttgaaaattatgcaagc 516
Query: 319 tca 321
|||
Sbjct: 517 tca 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 721
Length adjustment: 9
Effective length of query: 314
Effective length of database: 712
Effective search space: 223568
Effective search space used: 223568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_j11.g1 MSMg01no299_j11.g1 CHROMAT_FILE:
MSMg01no299_j11.g1 PHD_FILE: MSMg01no299_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:33 2005
(289 letters)
>mm_chr6_129466430_129467118
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Minus
Query: 1 aggcatcagtgacagcctaggtcacgacattctggaaatgaaaaccacaccgagttccca 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 489 aggcatcagtgacagcctaggtcaccacattctggaaatgaaaaccacaccgagttccca 430
Query: 61 aacgcaatgctagtcggcaggttgccctacatgcaccgccaaaccttttagtacatcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aacgcaatgctagtcggcaggttgccctacatgcaccgccaaaccttttagtacatcttc 370
Query: 121 aaacctgaccccctatcttagtgttctgagtccactcacatgtaatggtgctctggagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaacctgaccccctatcttagtgttctgagtccactcacatgtaatggtgctctggagag 310
Query: 181 tgctgtcatggtcaaaagcaatgacagtcacttcataaggcggcggggccccatcttccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgctgtcatggtcaaaagcaatgacagtcacttcataaggcggcggggccccatcttccc 250
Query: 241 cgttttctggacggttcaggcagcagcggaagcatactgaagtcaggcc 289
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 249 cgttttctggacggctcaggcagcagcggaagcatactgaagtcaggcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
