Query= MSMg01no299_l12.b1 MSMg01no299_l12.b1 CHROMAT_FILE:
MSMg01no299_l12.b1 PHD_FILE: MSMg01no299_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:43 2005
(660 letters)
>mm_chr6_109153572_109154629
Length = 1058
Score = 468 bits (242), Expect = e-136
Identities = 271/282 (96%), Gaps = 6/282 (2%)
Strand = Plus / Plus
Query: 5 gaattctttaggc-ttacttcctatccttgaagctgtgctctttagtaagagggagctag 63
||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattctttaggcaatatttcctatccttgaagctgtactctttagtaagagggagctag 264
Query: 64 tgaggtgagagaatggggctccagagagccatcccattaccccaccaagagttcagatac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaggtgagagaatggggctccagagagccatcccattaccccaccaagagttcagatac 324
Query: 124 tttagaattaatacaaagaggttccctgaaaggccaaata-tttttccattcaaaacttc 182
||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||||
Sbjct: 325 tttagaattaatacaaagaggctccctgaaaggccaaa-agtttttccgttcaaaacttc 383
Query: 183 ttttctctgatggacaagccaccatggcccaactgaacacaacactcttgaatccaggct 242
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 t---ctctgatggacaagccaccatggcccaactgaacacaacactcttgaatccaggct 440
Query: 243 cttcaaagtgtcccatccaactctccctgaacgatattcttt 284
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcaaagtgtcccatccaactctccctgaacgatattcttt 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1058
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1048
Effective search space: 681200
Effective search space used: 681200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_l12.g1 MSMg01no299_l12.g1 CHROMAT_FILE:
MSMg01no299_l12.g1 PHD_FILE: MSMg01no299_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:43 2005
(658 letters)
>mm_chr6_109304032_109305089
Length = 1058
Score = 1122 bits (580), Expect = 0.0
Identities = 586/588 (99%)
Strand = Plus / Minus
Query: 71 ctgcctatgtggtctgtgttatgtacttttcttccattatctccatcaagatctatgtca 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 ctgcctatgtggtctgtgttatgtacttttcttccattatctccatcaagatctatgtca 999
Query: 131 gtctcagaacatgtctagaagagtaataattataattaatactctatgaagaaaattaga 190
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 gtctcagaacatgtctaggagagtaataattataattaatactctatgaagaaaattaga 939
Query: 191 ttcaagaaagtcaaataatgtggccaagttcattcaactaccaagggacaacactgagat 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 ttcaagaaagtcaaataatgtggccaagttcattcaactaccaagggacaacactgagat 879
Query: 251 gaatctacatctctgactcccgtgcattctatcgagaaagcctacttctaacttatattc 310
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 878 gaatctacatctctgactcccgtgcattctatcaagaaagcctacttctaacttatattc 819
Query: 311 tcttgtcctatgaccccactacctgcattgtttcaacatgatgtaattaaactacaataa 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tcttgtcctatgaccccactacctgcattgtttcaacatgatgtaattaaactacaataa 759
Query: 371 gaaacttgaagccacttcttgttctatgagtttcttttctctttctacctcctggtagat 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaaacttgaagccacttcttgttctatgagtttcttttctctttctacctcctggtagat 699
Query: 431 ttgtatgtttaagtactgtgatttttaaaatcacaaatctaaaattgtaacgtttaatca 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttgtatgtttaagtactgtgatttttaaaatcacaaatctaaaattgtaacgtttaatca 639
Query: 491 tcgttttagagaattcttttaaagaatactcagtacataaattcccctctagccaacatg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcgttttagagaattcttttaaagaatactcagtacataaattcccctctagccaacatg 579
Query: 551 atactttgcagatttttaagaacagtcataatttagtggatttaggacactctttatttg 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atactttgcagatttttaagaacagtcataatttagtggatttaggacactctttatttg 519
Query: 611 gaccatgtatttctacttgtgatacagaaaattgccattttctcaaag 658
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaccatgtatttctacttgtgatacagaaaattgccattttctcaaag 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
