Query= MSMg01no300_e05.b1 MSMg01no300_e05.b1 CHROMAT_FILE:
MSMg01no300_e05.b1 PHD_FILE: MSMg01no300_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:22 2005
(689 letters)
>mm_chr6_22813164_22814252
Length = 1089
Score = 1176 bits (608), Expect = 0.0
Identities = 668/690 (96%), Gaps = 4/690 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttcatgtcattaatgatcttgattgagcttcaaattataatatcaggttgac 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattctttcatgttattaatgatcttgattgagcttcaaattataatatcaggttgac 259
Query: 64 ctgtatgcagacctcatagacacaagtgctataaagaagcagtttcactgcaagataaac 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 260 ctgtatgcagacctcatagacacaagtgctatgaagaagcagtttcactgcaagataaac 319
Query: 124 taacatggccaggtgtggtggcgcacgcctttaatcccagcactcgggaggcagaggcag 183
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 taacatggctgggtgtggtggcgcatgcctttaatcccagcactcgggaggcagaggcag 379
Query: 184 gaagatttctgagttcaagaccagcctggtctacaaagtgagttccaggtcagccagggc 243
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaagatttctgagtttgagaccagcctggtctacaaagtgagttccaggtcagccagggc 439
Query: 244 tatacagagaaaccctgtctcgg----aaaaaaaaaaaagataaacaaacatgaattgtt 299
||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct: 440 tatacagagaaaccctgtctcagaaaaaaaaaaaaaaaagataaactaacatgaattgtt 499
Query: 300 agacccagcttatatggtgggtactctctcgatgatattgacagatctgagtagtgctta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agacccagcttatatggtgggtactctctcgatgatattgacagatctgagtagtgctta 559
Query: 360 gaaaagatgattttctaggtataacaagactgagtataacaagatgttttccaatggctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaaaagatgattttctaggtataacaagactgagtataacaagatgttttccaatggctg 619
Query: 420 actagctataacaagatgacctcccattgctgaccagctataaggaggtgatatcctgtg 479
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct: 620 actagctataacaagatgacctcccattgctgaccagctatagggagatgataccctgtg 679
Query: 480 atcatacgaattgaggactgtgttccaatgtgaccaccaaacctttgtgtctagtaatac 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atcataggaattgaggactgtgttccaatgtgaccaccaaacctttgtgtctagtaatac 739
Query: 540 tgaactctttgaactttgagaaacacctgtaaaaatggggaaatgatcccttgtgtgtgg 599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgaactctttgaacattgagaaacacctgtaaaaatggggaaatgatcccttgtgtgtgg 799
Query: 600 catttgtgagaggctaaagttagaatgtaaacatagtgagtgaagttagtaaactgttga 659
|||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 800 catttgggagaggctgaagttagaatgtaaacatagtgaggggagttagtaaactgttga 859
Query: 660 ggtatgctctattgctatgtactataatgc 689
||||||||||||||||||||||||||||||
Sbjct: 860 ggtatgctctattgctatgtactataatgc 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_e05.g1 MSMg01no300_e05.g1 CHROMAT_FILE:
MSMg01no300_e05.g1 PHD_FILE: MSMg01no300_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:23 2005
(669 letters)
>mm_chr6_22964885_22965953
Length = 1069
Score = 1224 bits (633), Expect = 0.0
Identities = 660/669 (98%)
Strand = Plus / Minus
Query: 1 ttaaaacaaccatgtcctctggaacatgttcagctgatcagaaaagctatgtctatatag 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 869 ttaaaacaaccatgtcctctggaacatgttcagctggccagaaaagctatgtctatatag 810
Query: 61 aaatgaaatcccacaatggcatcactttgaggaaaggagaaggcagcttttactgttcaa 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 809 aaatgaaatcccacaatggcatccctttgaggaaaggagaaggcagcttttactgttcaa 750
Query: 121 taatacagcagtagtggaacttaagaggataatgaacacaaaagcaaaactcgaagtgat 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 749 taatacagcagtagtggaacttaagaggataatgaacacagaagcaaaactcgaagtgat 690
Query: 181 ttttatttctgacagatgcaagtcttgttgatgagcatttggagaatgaatatatttaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttttatttctgacagatgcaagtcttgttgatgagcatttggagaatgaatatatttaga 630
Query: 241 agcaatgacaattgtgacctacaatgtcacctgcatctattttcattcagataataagag 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agtaatgacaattgtgacctacaatgtcacctgcatctattttcattcagataataagag 570
Query: 301 taacatctggtgagagcacactacatagtgccgagtggagcagagacacaactgctgcta 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 569 taacatctggtgagagcacactacatagtgctgagtggagcagagacacaactgctgcta 510
Query: 361 tacaataaagcaagccatcccgtaatttgagagatttaggtaattaaaatggctaatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tacaataaagcaagccatcccgtaatttgagagatttaggtaattaaaatggctaatgac 450
Query: 421 tccttttgatgtgcgtaattttatttaagttagtcacgaatggttgagtttccacagaaa 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 449 tccttttgatgtgcgtaattttatttaagttagtcacgaatggttgggtttccacagaaa 390
Query: 481 tatctctctacaggaaaatcttaatcttattttccattttaaagcttcaagctacacatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tatctctctacaggaaaatcttaatcttattttccattttaaagcttcaagctacacatt 330
Query: 541 attacttctaatgagctttaacatggcatttgttcttattcagtgacctcctaaatctca 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 attactcctaatgagctttaacatggcatttgttcttattcagtgacctcctaaatctca 270
Query: 601 gaatatttccagtaaatcagttccctggatacagttcttgaatggcctcccactgttatt 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtatatttccagtaaatcagttccctggatacagttcttgaatggcctcccactgttatt 210
Query: 661 agaatcata 669
|||||||||
Sbjct: 209 agaatcata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
