Query= MSMg01no300_f18.b1 MSMg01no300_f18.b1 CHROMAT_FILE:
MSMg01no300_f18.b1 PHD_FILE: MSMg01no300_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:29 2005
(317 letters)
>mm_chr6_54350198_54350914
Length = 717
Score = 557 bits (288), Expect = e-163
Identities = 306/312 (98%)
Strand = Plus / Minus
Query: 5 gaattcacccaggtgtcaacagagtcctcattagagggcatcacaccagtaccagagatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcacccaggtgtcaacagagtcctcattagagggcatcacaccagtaccagagatg 457
Query: 65 gtagagatgtctgttcctgcattttcacacatacgtatcttagttctcagacaagttttg 124
||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 456 gtagagatgtctgtttctgcattttcacacatacatatcttaattctcagacaagttttg 397
Query: 125 gaaacatctcctgggaagaaaaccctgcttctatgaagcccttactcagaggaggtattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaaacatctcctgggaagaaaaccctgcttctatgaagcccttactcagaggaggtattc 337
Query: 185 agtacactttcggtggtctgttgattggcttctcattgcttgttctttggtgtgtatttt 244
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agtacactttcattggtctgttgattggcttctcattgcttgttctttggtgtgtatttt 277
Query: 245 tctttctccttagagctaaataaggtaaatctgcaacctaactacaaaaaaagattttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 tctttctccttagagctaaataaggtaaatctgcaacctaactacaaaaaaggattttca 217
Query: 305 aaggcagaattc 316
||||||||||||
Sbjct: 216 aaggcagaattc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_f18.g1 MSMg01no300_f18.g1 CHROMAT_FILE:
MSMg01no300_f18.g1 PHD_FILE: MSMg01no300_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:29 2005
(284 letters)
>mm_chr6_54156273_54156956
Length = 684
Score = 505 bits (261), Expect = e-147
Identities = 279/285 (97%), Gaps = 2/285 (0%)
Strand = Plus / Plus
Query: 1 actaagagaagagaggacttaagcaagtatgtttgctgacttgccccctaagtgccccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagagaagagaggacttaagcaagtatgtttgctgacttgccccctaagtgccccac 260
Query: 61 cccagagttagcagcaccattgtcttccctttgattctg-ttctattgggcagctcaagc 119
||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 261 cccagagttagcagcacaattgtcttccctttgattc-gattctattgggcagctcaagc 319
Query: 120 tccttgggcttaggagaaatatggagaatttaaagacagtcagaggggatgaggcagatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tccttgggcttaggagaaatatggagaatttaaagacagtcagaggggatgaggcagatg 379
Query: 180 agctaacggctggaggttaagagagcaaggcttctttagtttgaggaagaacacgcaatc 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agctaagggctggaggttaagagagcaaggcttctttagtttgaggaagaacacgcaatc 439
Query: 240 aaggggccgatactgcttttaataatcaatccgtgttctacagag 284
|||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 440 aaggggccgagactgcttttaataatcaatccgtgttctccagag 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
