BAC Information

Click to search

BAC

Clone NameMSMg01-300G10
Chromosome6 (Build37)
Map Location 107,787,723 - 107,788,027
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps6_1128.1, Lrrn1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300G10.T7 (MSMg01no300_g10.b1)MSMg01-300G10.TJ (MSMg01no300_g10.g1)
ACCAG426899AG426900
length738740
length of high quality
(start - end)
310 (43 - 352)280 (72 - 351)
definitionCHROMAT_FILE: MSMg01no300_g10.b1 PHD_FILE: MSMg01no300_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:32 2005CHROMAT_FILE: MSMg01no300_g10.g1 PHD_FILE: MSMg01no300_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTCTAATTTTTTCCACTAGTGTTCTGCTTAAGTTCAGGCTCACAAA
TCTTCTCAAAATGTAACAATCAGCATTTGGGAGCAAGTACGTACAAGGCC
TAGCACATCACTGTGCAAGTAACTTTTTGTTGTAGCATGATGTCTTATTC
AGGGTTTCTATTTCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAG
GAAAGGGTTTATTCAGCTTACACTTCCATGTTGAGGTTCATTACCAAAGG
AAGTTAGGACTGGAACTCAAGAAGATTAGGAAACAGGAGCTGATGCAGAA
TTTTGTTAGTTACCCCCTCCCCGCCTTGCTTCCCCAGGGTTGCTCATCTT
GCTTTCTTATAGAACACAAAACCACCAGCCCAAGGATGGTACCACCCATA
AGGGGCCCTCCCCTCTTGATCACTCATTGAGAAAATGCCTTATATTTGGA
TCTCGTGGAGGGATTTTCTCAGCTGAAGCTCCTTTCTTTGTGATAACTCC
ATCTGGTGTCAAGTTGACACAAAACCAGCCAGTACACGTGTCTTCTCCAA
GTAGGGCAAAACCCCACAGGTTTCTGTAATGCCAATCATTTGACAGGTAC
AGGGTCTTATAATGAACTATCTGACAAAAATCTTTATAATAGACATAAAT
TACATACCTTTTTGGTACACAAAACGTGTATTATATTG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGTGTATCTGTGGAGTATTTGCAAGTG
GATTGAGCTGCTGCCACTTGCTAACCTGTGAACTAAACTGCCGATTTCCA
GACAACACAGATGGGAGTTGCTCCAAAGAACCTTTCTAAACAGGTCCACT
TGCCCTGTATCCTTTCTTTTCCACTACCTCTGGTAGGTGGTGGGCTACAA
AGGAGGTTAAAGCCTTTAAAGACCAACATTAAAAGTAAGGCATTGAAAAA
ATTTAAGTTACACACCCATATGCACACACACATACACACACAAACGAACA
CTTTTTCTANTTTTGCCCCCCCCCCACTTAAAAGAGAGCTAAATTGATAT
TTAATAGCTAAAGAAAAAGACAAAGCAAAGAACAGACCAGGTAGAGAGAC
TGGAGGGTGGCCAGTAAGTCAGGGACCTCCTCTTTAAGCCAGGCAGGAGG
CAGATAATTCTAAACAAAAGTAGCAGTGGCTACAGCACAAAGTCCAGATA
TACTTAAGAAAGAGACCGGGAATACCGCTATGACAGTCACAGTCAGAGCA
CTAATCTTAACCTAATAGGCCTGGAAGAAGTTGAATTAAGCGAATTGAGC
AGCCTTACTGGCTCAGTTCCAAAGATGTTAAAGCAGGGGACAGACTCATG
CTTCACTCTCTCTCCCTAGACCCAATCCATCTCCTACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_g10.b1 MSMg01no300_g10.b1 CHROMAT_FILE:
MSMg01no300_g10.b1 PHD_FILE: MSMg01no300_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:32 2005
         (310 letters)



>mm_chr6_107787680_107788389
          Length = 710

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttctaattttttccactagtgttctgcttaagttcaggctcacaaatcttc 63
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 348 ggaattcttttctaattttttccactagtgttctgcttaagttcgggctcacaaatcttc 289

                                                                       
Query: 64  tcaaaatgtaacaatcagcatttgggagcaagtacgtacaaggcctagcacatcactgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcaaaatgtaacaatcagcatttgggagcaagtacgtacaaggcctagcacatcactgtg 229

                                                                       
Query: 124 caagtaactttttgttgtagcatgatgtcttattcagggtttctatttctgcacaaacat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 caagtaactttttgttgtagcatgatgtcttattcagggtttctatttctgcacaaacat 169

                                                                       
Query: 184 catgaccaagaagcaagttggggaggaaagggtttattcagcttacacttccatgttgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 catgaccaagaagcaagttggggaggaaagggtttattcagcttacacttccatgttgag 109

                                                                       
Query: 244 gttcattaccaaaggaagttaggactggaactcaagaagattaggaaacaggagctgatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gttcattaccaaaggaagttaggactggaactcaagaagattaggaaacaggagctgatg 49

                
Query: 304 cagaa 308
           |||||
Sbjct: 48  cagaa 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)