BAC Information

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BAC

Clone NameMSMg01-300K12
Chromosome6 (Build37)
Map Location 86,599,988 - 86,600,268
singlet/doubletsinglet
Overlap genenone
Upstream geneAlms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1
Downstream geneMxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300K12.T7 (MSMg01no300_k12.b1)MSMg01-300K12.TJ (MSMg01no300_k12.g1)
ACCAG427086AG427087
length741736
length of high quality
(start - end)
291 (64 - 354)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no300_k12.b1 PHD_FILE: MSMg01no300_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:51 2005CHROMAT_FILE: MSMg01no300_k12.g1 PHD_FILE: MSMg01no300_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCTACATGAGGTCCTATCTCAAAGGAAGAAAAGAGA
AAGAAAGAGGGGGTAGGCCCGGAGAAGGAAGAACAAGAGGAGGAGGAGGA
GAAAAGGAAAAGAGAATTAAATAGACACAAGGGACTGTAGTAGTCCCAAT
TAAATTCCCAAAATGATCCTTGCAGCAGTGCGTTCCTTGATACCTGCCCC
TATGTTCTGGGTTTCCAAATGAAAGACACACACACAGCCTTTATATTGTG
ATGTGCCTAAAACAGCTCTTTGGCTGGGCTACTTCCTAACCTTCACATGG
CTATTNCATCGCTCTCCATATCGAGCCGTATCTTACTTAGGGCTTTACTG
CTGCGAACAGACACCAAGACAAAAACAATATTATAGGGACGACGACATTT
AATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGC
AGGAACATGGCTGCATCCATTCATGTATGGCGCAGGAGGAGCTGAGACCT
CTACATCTTCATCTGAACGCTGTTAGCACAACACTGACTTCCTGGTATTT
AGGTCGAGGGTCTTTAATTCCTCCCCTCCAGCGTCATTTCTACTTCCCCT
ACGCCATACCTCTTAATATCGCCATCCTTCTACGGCCACGTATATACCTT
CCATCTTCCCCATGCTATTTACTTACCCACTTCTATTTTCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGATGTGTTCAAAAATAACTTAGCA
GGAGGGTTCTGGTGACATGAGGAACCCTCCCGTTCACTTGCCACAGAGAA
GAAATGTGGCCTCTTTCTCTCACAGATAGTGGCTACTAGCTCAGCCAGTG
CCAAAACTCAGTTATTGCTGGGAATCCGACAGGGGTGCAGGTGGGAGGGA
CCATGGGGACAAAGAAGCAGTGACTTTTGTCATGTGGACAAGGAGATCTC
ATCTATCTCTGAGGTAGGACAATGTTCCAGAGACAAGGAGCATCAACAAA
CTCGGTTTTTGGGGCCCCCCTGACCACACAGCACACACCAAGCCCCCGGA
ACAGCACGCAGGGGGCACACTGTTCTCCTGAGCTGCCGAGTGCCCGCTCT
TAAGTAGAGCCGCCTCAGCACTGCGACCGGGTCGCAGCAGGGCTTGCTGG
AGGTGCTCCTGGCTTCTCAGTGCTCTTCAGTTTTGCTTTCACAGCTTCCT
TTGGGGTTTCTGCGATTGAGTTCCCTTTGAGAAGTTTGCTTGATGTGGTT
TCCTATGCGCCAGGCAAAGCTTCTACTTCTCTCCTGCGCGAGTATCTCCG
TGAGCCATACAACTAGGAAAGATCTCGTTAGCTGCAGGACATTGCACTGG
CTGTTGCCGATAGTTGACACTTGCTCGGCCTATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_k12.g1 MSMg01no300_k12.g1 CHROMAT_FILE:
MSMg01no300_k12.g1 PHD_FILE: MSMg01no300_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:51 2005
         (282 letters)



>mm_chr6_86599788_86600469
          Length = 682

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatgtgttcaaaaataacttagcaggagggttctggtgacatgaggaaccctcccgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatgtgttcaaaaataacttagcaggagggttctggtgacatgaggaaccctcccgtt 260

                                                                       
Query: 61  cacttgccacagagaagaaatgtggcctctttctctcacagatagtggctactagctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttgccacagagaagaaatgtggcctctttctctcacagatagtggctactagctcag 320

                                                                       
Query: 121 ccagtgccaaaactcagttattgctgggaatccgacaggggtgcaggtgggagggaccat 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ccagtgccaaaactcagttattgctgggaatccgacaggggcgcaggtgggagggaccat 380

                                                                       
Query: 181 ggggacaaagaagcagtgacttttgtcatgtggacaaggagatctcatctatctctgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggacaaagaagcagtgacttttgtcatgtggacaaggagatctcatctatctctgagg 440

                                                    
Query: 241 taggacaatgttccagagacaaggagcatcaacaaactcgg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggacaatgttccagagacaaggagcatcaacaaactcgg 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)