BAC Information

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BAC

Clone NameMSMg01-300N21
Chromosome6 (Build37)
Map Location 24,126,486 - 24,127,092
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384356, Fezf1, Cadps2, Rnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1
Downstream geneLOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300N21.T7 (MSMg01no300_n21.b1)MSMg01-300N21.TJ (MSMg01no300_n21.g1)
ACCAG427233AG427234
length729736
length of high quality
(start - end)
610 (48 - 657)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no300_n21.b1 PHD_FILE: MSMg01no300_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:07 2005CHROMAT_FILE: MSMg01no300_n21.g1 PHD_FILE: MSMg01no300_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACATTCTATTTAGTGAATCTCATAAAGCTTTTTGTACATTCTT
TGTTTTGCTTAACCCTGTTCTTTCTCCCATCTTCCCTCCACTTTCAGCAC
TGCTTAAAGTTTTAATTTCCAGTATCCTTTCACCTCTCCACATATGGCAT
GATTTCTACTATTCCCTCCAATCATATTTCCAATTGGATTGTGAGGTAGT
CATTTATGTATTTTCATATCCCTTCCTTTAAGCTAATTCTCAATGACAGC
ACATAATTTTCCCTATCCCCCCTTGACCCTCCCTCCCAGAAACGACACCA
AGCATGATTAAGATAGGAGATAAACCTACAGAAAGACAAAGTTTGTCTCA
CTGTTAATAAAAATATAAGATGAACAGAGAGGAAAGGAGTTGTTTCAGTC
TGGAAGAAGAAATGAGTCACTTGTCATCAGAGGTATCCAGCAATATGCTG
GGAAGAAACAAGTTTTGGCTTGCATATTTCCTGAGACCTTGGAACACTTT
TCCAAACCAAAAGTACTATGAATCTAAAAATGTCTAGGAAACCATAGTAG
GATGGGATATTTGCTTGAGAATTTATAGTGAATTATTATGGAGAAATCAT
TATGCAAAGTAATAAGCCAGACATAACTGCCCTCTAATAACGCTTGTCTT
ATCTCTGCCAGACCAGATGATTCTTTGCN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATATTTAACACCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATATGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCAGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTTTTATATCCCCCACCCACCCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGACTAATTTATAATAGCC
AGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGCACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGCACTCACTGAT
AAGTGGATATTAGCCCATAATCTAGGATATCCAAGATATAAGATACAATT
TCCTAAACACATGACACTCAAGAAAAATGAATACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_n21.b1 MSMg01no300_n21.b1 CHROMAT_FILE:
MSMg01no300_n21.b1 PHD_FILE: MSMg01no300_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:07 2005
         (610 letters)



>mm_chr6_24126283_24127292
          Length = 1010

 Score = 1143 bits (591), Expect = 0.0
 Identities = 603/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacattctatttagtgaatctcataaagctttttgtacattctttgttttgctt 63
           |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 810 ggaattcacattctatctagtggatctcataaagctttttgtacattctttgttttgctt 751

                                                                       
Query: 64  aaccctgttctttctcccatcttccctccactttcagcactgcttaaagttttaatttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aaccctgttctttctcccatcttccctccactttcagcactgcttaaagttttaatttcc 691

                                                                       
Query: 124 agtatcctttcacctctccacatatggcatgatttctactattccctccaatcatatttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agtatcctttcacctctccacatatggcatgatttctactattccctccaatcatatttc 631

                                                                       
Query: 184 caattggattgtgaggtagtcatttatgtattttcatatcccttcctttaagctaattct 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 caattggatcgtgaggtagtcatttatgtattttcatatcccttcctttaagctaattct 571

                                                                       
Query: 244 caatgacagcacataattttccctatccccccttgaccctccctcccagaaacgacacca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caatgacagcacataattttccctatccccccttgaccctccctcccagaaacgacacca 511

                                                                       
Query: 304 agcatgattaagataggagataaacctacagaaagacaaagtttgtctcactgttaataa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agcatgattaagataggagataaacctacagaaagacaaagtttgtctcactgttaataa 451

                                                                       
Query: 364 aaatataagatgaacagagaggaaaggagttgtttcagtctggaagaagaaatgagtcac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaatataagatgaacagagaggaaaggagttgtttcagtctggaagaagaaatgagtcac 391

                                                                       
Query: 424 ttgtcatcagaggtatccagcaatatgctgggaagaaacaagttttggcttgcatatttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttgtcatcagaggtatccagcaatatgctgggaagaaacaagttttggcttgcatatttc 331

                                                                       
Query: 484 ctgagaccttggaacacttttccaaaccaaaagtactatgaatctaaaaatgtctaggaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctgagaccttggaacacttttccaaaccaaaagtactatgaatctaaaaatgtctaggaa 271

                                                                       
Query: 544 accatagtaggatgggatatttgcttgagaatttatagtgaattattatggagaaatcat 603
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 accatagtaggatgggagatttgcttgagaatttatagtgaattattatggagaaatcat 211

                  
Query: 604 tatgcaa 610
           |||||||
Sbjct: 210 tatgcaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)