BAC Information

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BAC

Clone NameMSMg01-300P21
Chromosome6 (Build37)
Map Location 144,206,124 - 144,379,630
singlet/doubletdoublet
Overlap genenone
Upstream geneD6Ertd474e, Sox5
Downstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300P21.T7 (MSMg01no300_p21.b1)MSMg01-300P21.TJ (MSMg01no300_p21.g1)
ACCAG427318AG427319
length742745
length of high quality
(start - end)
249 (74 - 322)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no300_p21.b1 PHD_FILE: MSMg01no300_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:16 2005CHROMAT_FILE: MSMg01no300_p21.g1 PHD_FILE: MSMg01no300_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,206,124 - 144,206,372)(144,379,342 - 144,379,630)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAATACGCGGAA
TTCATTTGTTCTGGCAAACACGGTATTCATCCATCCGTTTATCTTGTTGT
AAACAGGCATTTACTGAATGCCCACTGTGTGTGGTACACAGATCAAGTCA
CTGGTGATCCAAGGTTGACTGAAAGGTGACTGCATTCTTGTGGTTGGTAT
AGTCCAGGCCAAGATACAGAAAGCAATCACAAAATGCATGGCTCTGTGAG
ACTCTAACACCATTAAAAAAAAAAATGTCCTGGCCTGATACCAAGATTGA
CCCTTTAAAGGAACTGGGAGGACCATTCAGAGGCAAGAAGGCTTTTCTTC
TCAAGCAGAAAGTCAGAATATGACTCCAACTTACTGCAATGAGCAACGCA
GGGCAGAGAGTCTCTTAGCCGTTGAGCAGGCTGCCACAAGCTAACTGTTG
AGGAAAGCATGTGACCAGAGAACTCAGTTGACTGGAGAGAGAGCAACACT
AAGGGTATCAAGAGGGTCATGTGGATCATCAGGCATAGAAGCGACTGTAT
AACCCATGTCTGGGAGCCTGGTGCCATCCAAAGAGACATCCAGGAACCCT
CTGCAGCCCTGCGTGTGGACATGGTCGTGATATAATAGAGGTGTGAGCTC
ATTCTAATTTGACCTCTATTCTACAAATATCTGCAGTGTTTGACAGTCAG
TCACCATTGTCCTTTCTCAGTACCGGATACTATGCTTTTAAT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGGAGTTTGAGCCACAATATTTTT
TCTATATATGACTTGTTTTATAAACCAAACTTTAGCTATGATAAATAATG
TTTAAAACTGTGAGCATCTGATTAATTGCTGTGCACATCTGAAATTTACA
TTTGCGTACCATTTATAGTTTCAATTCAAGCTGAAGAGTTTTGTGGAAAC
TCATAAAAGCTTTTGAATTTTATATTTTATTCCAAAAGGGGGGTCTGTTT
GAAAATTAGCATTATGGTTTCACTATAATTGACATGTGATCTATATGACT
TTATGAACAGGAAAATTTTTTTAGTTCCCCCCCCCTAAATAAGTACATAG
TTTAGCAGGAATTAGAAAGCATGGATTGTGGAAACCACCCTGAAGTTTAC
CAGCTGGGTAGTAAAGGTTGCTAATCTGTATTTACCAGCAGATGATCAAA
CATGCCAAATGCGCAGGGTTGGTTTTGTCTCTACAATTTCTTTTGCTTTT
GTTAAGCTATTGTGTCCACAGTGACAAACAGACATTGCGTGAAGGAACTG
CCTTTCTTACTCACAACTGTTGATTTGGCAAATGAGGAACACAGGCCATT
ATTTCAGGTAAATAACAGAGGACAATATTCATGCATGTTTTCATAACAAC
TGTTAGCTTGCAGACAGTGCTATGCATATTTGCAACGCATATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_p21.b1 MSMg01no300_p21.b1 CHROMAT_FILE:
MSMg01no300_p21.b1 PHD_FILE: MSMg01no300_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:16 2005
         (249 letters)



>mm_chr6_144205924_144206572
          Length = 649

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattcatccatccgtttatcttgttgtaaacaggcatttactgaatgcccactgtgtgtg 60
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tattcatccatctgtttatcttgttgtaaacaggcatttactgaaggcccactgtgtgtg 260

                                                                       
Query: 61  gtacacagatcaagtcactggtgatccaaggttgactgaaaggtgactgcattcttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacacagatcaagtcactggtgatccaaggttgactgaaaggtgactgcattcttgtgg 320

                                                                       
Query: 121 ttggtatagtccaggccaagatacagaaagcaatcacaaaatgcatggctctgtgagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtatagtccaggccaagatacagaaagcaatcacaaaatgcatggctctgtgagact 380

                                                                       
Query: 181 ctaacaccattaaaaaaaaaaatgtcctggcctgataccaagattgaccctttaaaggaa 240
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 381 ctaacaccattgaaaaaaaaaatgtcctggcctgataccaggattgaccctttaaaggag 440

                    
Query: 241 ctgggagga 249
           |||||||||
Sbjct: 441 ctgggagga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no300_p21.g1 MSMg01no300_p21.g1 CHROMAT_FILE:
MSMg01no300_p21.g1 PHD_FILE: MSMg01no300_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:16 2005
         (289 letters)



>mm_chr6_144379142_144379830
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggagtttgagccacaatattttttctatatatgacttgttttataaaccaaacttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 489 tttggagtttgagccacaatattttttctatatatgacttgttttataaaagaaacttta 430

                                                                       
Query: 61  gctatgataaataatgtttaaaactgtgagcatctgattaattgctgtgcacatctgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gctatgataaataatgtttaaaactgtgagcatctgattaattgctgtgcacatctgaaa 370

                                                                       
Query: 121 tttacatttgcgtaccatttatagtttcaattcaagctgaagagttttgtggaaactcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttacatttgcgtaccatttatagtttcaattcaagctgaagagttttgtggaaactcat 310

                                                                       
Query: 181 aaaagcttttgaattttatattttattccaaaaggggggtctgtttgaaaattagcatta 240
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 309 aaaagcttttgaattttatattttatttgaaaaggggggtctgtttgaaaattagcatta 250

                                                            
Query: 241 tggtttcactataattgacatgtgatctatatgactttatgaacaggaa 289
           ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 249 tggtttcactataattgacatgtgatctatatgactttatgaaaaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)