Query= MSMg01no301_a04.b1 MSMg01no301_a04.b1 CHROMAT_FILE:
MSMg01no301_a04.b1 PHD_FILE: MSMg01no301_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:18 2005
(693 letters)
>mm_chr6_99180208_99181300
Length = 1093
Score = 1249 bits (646), Expect = 0.0
Identities = 679/690 (98%), Gaps = 2/690 (0%)
Strand = Plus / Plus
Query: 5 gaattctccatcacagaacctgcagctgaagagctaaccctaggacttataaccatgtaa 64
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctccatcacagaatttgcagctgaagagctaaccctaggacttctaaccatgtaa 264
Query: 65 catcccaaggaacagtaagtaggaaggtagctccatctgcaaagggcttgccttaagagg 124
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catcccaattaacagtaagtaggaaggtagctccatctgcaaagggcttgccttaagagg 324
Query: 125 cacacgccataaattccagcagaggaaaccccacaaaagcagacctaatggtatgcattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacacgccataaattccagcagaggaaaccccacaaaagcagacctaatggtatgcattt 384
Query: 185 gaaagaccaaggctgaggaggcaggggcaggtagattccctgggactcactggccaggtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaagaccaaggctgaggaggcaggggcaggtagattccctgggactcactggccaggtt 444
Query: 245 agcatagca-cgcatccaaattaacttggctggcaactgagacacaacatccaaggttga 303
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcata-caacgcatccaaattaacttggctggcaactgagacacaacatccaaggttga 503
Query: 304 tttttggcccttagacacacacagacatgcgtacccacaaacatgcaaacagacatatat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttttggcccttagacacacacagacatgcgtacccacaaacatgcaaacagacatatat 563
Query: 364 acatacaaaaagggcagtgagtcatgttataatactacacgtataggggtgctggtgaaa 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 acatacaaaaagggcagtgagtcatgttatactactacacgtataggggtgctggtgaaa 623
Query: 424 acattagcctacttcgattaaacaacaagaaagtgacataaactttataaataagttttg 483
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 acattagcctacttcgattaaacaacaagaaagtgacgtaaactttataaataagttttg 683
Query: 484 tctttacagtgtaccttcatgagtcccaagcctggaagaactggaaataactcgggttgt 543
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 tctttacagtgtaccttcatgagtcccaagcctggaagaactcgaaataactcgggttgt 743
Query: 544 ctgatttctaagtgatcttcttttcactggtggatgtgaaaaaggagaaagatttgatac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgatttctaagtgatcttcttttcactggtggatgtgaaaaaggagaaagatttgatac 803
Query: 604 tagagagacatagttgattcagatggaagagaatgcatacaacataggaaataaagccct 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tagagagacatagttgattcagatggaagagaatgcatacaacataggaaataaagccct 863
Query: 664 aggaaagaatgcaggtgtaagggtctgaga 693
||||||||||||||| ||||||||||||||
Sbjct: 864 aggaaagaatgcaggggtaagggtctgaga 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_a04.g1 MSMg01no301_a04.g1 CHROMAT_FILE:
MSMg01no301_a04.g1 PHD_FILE: MSMg01no301_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:18 2005
(294 letters)
>mm_chr6_99360426_99361120
Length = 695
Score = 561 bits (290), Expect = e-164
Identities = 293/294 (99%), Gaps = 1/294 (0%)
Strand = Plus / Minus
Query: 1 caggccagcctggctgcagtgagaccctgtctcaaaataaacaaacacatagacagtgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 caggccagcctggctgcagtgagaccctgtctcaaaataaacaaacacatagacagtgac 480
Query: 61 agaaaccaaaaccaagggaggaaagggaagaaaaggggggg-ggtgcagaaaagagcgga 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 479 agaaaccaaaaccaagggaggaaagggaagaaaagggggggtggtgcagaaaagagcgga 420
Query: 120 atatcagggagaaaaaatgttcctctgaggatcaatgtgtcagtaccctgtgggttgtcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atatcagggagaaaaaatgttcctctgaggatcaatgtgtcagtaccctgtgggttgtcc 360
Query: 180 ttgtggaccagtaaccagtgctgtgtctgattaagaccactttagaagattatgtctagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttgtggaccagtaaccagtgctgtgtctgattaagaccactttagaagattatgtctagc 300
Query: 240 tcatagatggatttggaacatctcagggtccaagcctcttagagctggtcagta 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcatagatggatttggaacatctcagggtccaagcctcttagagctggtcagta 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space: 195510
Effective search space used: 195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
