BAC Information

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BAC

Clone NameMSMg01-301E05
Chromosome6 (Build37)
Map Location 99,360,568 - 99,360,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301E05.T7 (MSMg01no301_e05.b1)MSMg01-301E05.TJ (MSMg01no301_e05.g1)
ACCAG427512AG427513
length737753
length of high quality
(start - end)
320 (40 - 359)396 (66 - 461)
definitionCHROMAT_FILE: MSMg01no301_e05.b1 PHD_FILE: MSMg01no301_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:37 2005CHROMAT_FILE: MSMg01no301_e05.g1 PHD_FILE: MSMg01no301_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCATCACAGAATCTGCAGCTGAAGAGCTAACCCTAGGACTTATAACCATG
TAACATCCCAAGGAACAGCAAGTAGGAAGGTAGCTCCATCTGCAAAGGGC
TTGCCTTAAGAGGCACACGCCATAAATTCCAGCAGAGGAAACCCCACAAA
AGCAGACCTAATGGTATGCATTTGAAAGACCAAGGCTGAGGAGGCAGGGG
CAGGTAGATTCCCTGGGACTCACTGGCCAGGTTAGCATAGCACGCATCCA
AATTAACTTGGCTGGCAACTGATACACAACATCCAAGGTTGATTTTTGGC
CCTTATATTTTTTTTTACCCGCCCCCCCACAAACATGCATACAGACATAT
ATACATACAAAAAGGGCAGTGAGTAAAGTTATAATACTACGCGCATAGGG
GTGCTGGTGAAAACATTAGCCTACTTCTATTAAACTACAAGAAAGTGACA
TATACTTTATAACTAAGTTTTGTCTTTACAGTGTACCTTCATGAGCCCCA
ATTCTGCAATAACTGTAAATAACTCGTCTTGTCTGACTTCTAAGCGACCT
TCCTTTCACTGGCGTACGCGAAAAAGGAGAATGATTTGACACTATCGAGT
CCTATTTGATTTCCATGGACGACAATGCCTACCACATATGAAACATAGCC
TACGAAAGAACGCCTTTTTACGGTCTGATAGATCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGCCAGCCTGGCTGCAGTGAGACCCTGTCTCAA
AATAAACAAACACATACACAGTGACAGAAACCAAAACCAAGGGAGGAAAG
GGAAGAAAAGGGGGGGGGTGCAGAAAAGAGCGGAATATCAGGGAGAAAAA
ATGTTCCTCTGAGGATCAATGTGTCAGTACCCTGTGGGTTGTCCTTGTGG
ACCAGTAACCAGTGCTGTGTCTGATTAAGACCACTTTAGAAGATTATGTC
TAGCTCATAGATGGATTTGGAACATCTCAGGGTCCAAGCCTCTTAGAGCT
GGTCAGTAGCTGTGGTTTTACCTGGAAGTCTGGCATAGCTGTGAATTCCT
GGGTCCTCTGCCAGACTATGGGGACCTGTGCTATGGGAGAGGTCCACATC
TCATTGTTGTTAAATATAAGGATCTCTGGTCCCAGTTTCTCTTTTTTGAC
TCAGGCCATCACCGTATGGATGATAGGTTTGGGGGCCATTTGTTTCGCCA
TTCTTTGTTACCTCTATAACCAATTACCCTGTCGTATTACCCTTGACTGT
TTCTTAGCCTTTATTCCCCCCCCGTTGTTCTTATATGGAACTCTGTCTCC
GCTATTGTCACAGTTCGCTCGTTACTCGTCTATACTATTTTTTTATTTCT
CATGCTTCAGCTACACTTCTCTTCTTACAGCGTGTCCCTCTTGTCTTTTT
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_e05.g1 MSMg01no301_e05.g1 CHROMAT_FILE:
MSMg01no301_e05.g1 PHD_FILE: MSMg01no301_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:37 2005
         (396 letters)



>mm_chr6_99360323_99361119
          Length = 797

 Score =  752 bits (389), Expect = 0.0
 Identities = 395/397 (99%), Gaps = 1/397 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagcctggctgcagtgagaccctgtctcaaaataaacaaacacatacacagtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 642 caggccagcctggctgcagtgagaccctgtctcaaaataaacaaacacatagacagtgac 583

                                                                       
Query: 61  agaaaccaaaaccaagggaggaaagggaagaaaaggggggg-ggtgcagaaaagagcgga 119
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 582 agaaaccaaaaccaagggaggaaagggaagaaaagggggggtggtgcagaaaagagcgga 523

                                                                       
Query: 120 atatcagggagaaaaaatgttcctctgaggatcaatgtgtcagtaccctgtgggttgtcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atatcagggagaaaaaatgttcctctgaggatcaatgtgtcagtaccctgtgggttgtcc 463

                                                                       
Query: 180 ttgtggaccagtaaccagtgctgtgtctgattaagaccactttagaagattatgtctagc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttgtggaccagtaaccagtgctgtgtctgattaagaccactttagaagattatgtctagc 403

                                                                       
Query: 240 tcatagatggatttggaacatctcagggtccaagcctcttagagctggtcagtagctgtg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcatagatggatttggaacatctcagggtccaagcctcttagagctggtcagtagctgtg 343

                                                                       
Query: 300 gttttacctggaagtctggcatagctgtgaattcctgggtcctctgccagactatgggga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gttttacctggaagtctggcatagctgtgaattcctgggtcctctgccagactatgggga 283

                                                
Query: 360 cctgtgctatgggagaggtccacatctcattgttgtt 396
           |||||||||||||||||||||||||||||||||||||
Sbjct: 282 cctgtgctatgggagaggtccacatctcattgttgtt 246


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 797
Length adjustment: 9
Effective length of query: 387
Effective length of database: 788
Effective search space:   304956
Effective search space used:   304956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)