BAC Information

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BAC

Clone NameMSMg01-301E19
Chromosome6 (Build37)
Map Location 39,033,215 - 39,033,794
singlet/doubletsinglet
Overlap geneTbxas1
Upstream geneAtp6v0a4, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, 1700025N23Rik
Downstream geneParp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301E19.T7 (MSMg01no301_e19.b1)MSMg01-301E19.TJ (MSMg01no301_e19.g1)
ACCAG427540AG427541
length738745
length of high quality
(start - end)
159 (147 - 305)585 (64 - 648)
definitionCHROMAT_FILE: MSMg01no301_e19.b1 PHD_FILE: MSMg01no301_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:40 2005CHROMAT_FILE: MSMg01no301_e19.g1 PHD_FILE: MSMg01no301_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTAAACGACTCCTATATTGCGGACGCGGCGGAANNCNAACCACTTT
GCCGAAAAAAAGAATANACGNNCAAGGACTGCCGGGGCAANNNAGGGAGA
CCCTTTCCCCCAAAAAAAAGCCCTTGCCTCCATGCTTGNAGGATGNGGTT
CAATCCNTTGGAGATATAAAATAAAAGCATATATGTATACTTTCCATATA
ATACATTTTNTTTCCTTTTTGCCTTGAATCCCCCCGACCCTTTTTAGACA
TGAATGTTTCGTATCTTCAATGTGTGTGAGTGCTGCTGGAATGGAACCCA
GAGTCTATTTTTTTTTTTACANANGCACGCCAACTCCAACCACAAGGNCT
TTTTTTTTTTCCCAAAGCCACCCCCCNCATTTAGCCCAAGNTAGCCCAGA
ACTCACTATGTAAAAATGGGAGNGAAAAACATTCGGAGGGGCTTGTGTCC
ACCTCCCAAGTAGCCACGTATTGAGATTACAGGTGTGTACTGGCTCATGT
GTTAGTGGGGAAATCAAACCCAGAGCTCTGTGCATCCTAGGTAAGCGCTC
TACCAACTGAGCTAGTCCCTGGGGAGTGTCTTCCACCTTGCAGTCTCAGG
GTCAGCCTTTTGTCATGCGTCAGTGCTGGGATGCAAACGCCATTGTTTTT
TCTTCGAGCCTATGCACTAAATATTGGAGCATGCTGTTTTCTTCCCGTGA
CTGACAACAACCCCTTTGAAGCCGTGCCCTTCCAATGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGGATTATGTCCTAGATTCACATACCGTTGGATAATA
ACTTCCTAGGTGAGGCGAGAAGGTACACCCAGCTGATTGTCTGAATGGAA
CAGTGCTTCTAAGACTGGGCAAAACACTGCTGAGACGTTGGTGATCGGAA
GCTATCAGTTACCTAAAGCCTTAAGGACAGTCCTGGACACAGGATCTTGT
TGGCCCTGACGAGGGAAGGGATCTCACATGAAGAGGTCACTCAGCCAGAA
ATGGGACTTTAGATCAGTGGTTCTCAACCTGTCTCAACCCCCTTTGGGGG
TCACATATCAGATATTTACATTACAATTCATAACAGTAGCAAAATTACAG
TTACAAAATAGCTATGAAATAACTTTATGATCACCACAACATGAGGAACT
GTATTAAATAAAGAGTCACAGCATTAAGGTTGAGAGTCACTGCTTTAGGT
TGAGCAGGTATTTCAGGCCAACGATAACCTTCACCTGACCCTTAGGTTCA
CAGCAGAGGCCCGGCTTCAGCGGAGGCCGTTCACATACCTGCCCTTCGGA
GCTGGCCCCAGGAGCTGCCTCGGAGTGCGGCTGGGCCTGCTGGTGGTCAA
GCTGACAATACTCCAGGTCCTACACAAGTTCCGCTTTGAAGTCAGCCCTG
AGACTCAGGTGAGGGTCTGATATTCCAGTGTAGGGCCCACCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_e19.g1 MSMg01no301_e19.g1 CHROMAT_FILE:
MSMg01no301_e19.g1 PHD_FILE: MSMg01no301_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:40 2005
         (585 letters)



>mm_chr6_39033015_39033999
          Length = 985

 Score = 1085 bits (561), Expect = 0.0
 Identities = 577/585 (98%), Gaps = 5/585 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggattatgtcctagattcacataccgttggataataacttcctaggtgaggcgagaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggattatgtcctagattcacataccgttggataataacttcctaggtgaggcgagaagg 260

                                                                       
Query: 61  tacacccagctgattgtctgaatggaacagtgcttctaagactgggcaaaacactgctga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tacacccagctgattgtctgaatggaacagtgcttctaagactgggcagaacactgctga 320

                                                                       
Query: 121 gacgttggtgatcggaagctatcagttacctaaagccttaaggacagtcctggacacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacgttggtgatcggaagctatcagttacctaaagccttaaggacagtcctggacacagg 380

                                                                       
Query: 181 atcttgttggccctgacgagggaagggatctcacatgaagaggtcactcagccagaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttgttggccctgacgagggaagggatctcacatgaagaggtcactcagccagaaatg 440

                                                                       
Query: 241 ggactttagatcagtggttctcaacctgtctcaaccccctttgggggtcacatatcagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggactttagatcagtggttctcaacctgtctcaaccccctttgggggtcacatatcagat 500

                                                                       
Query: 301 atttacattacaattcataacagtagcaaaattacagttacaaaatagctatgaaataac 360
           |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttaca-----attcataacagtagcaaaattacagttacaaaatagctatgaaataac 555

                                                                       
Query: 361 tttatgatcaccacaacatgaggaactgtattaaataaagagtcacagcattaaggttga 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttgtgatcaccacaacatgaggaactgtattaaataaagagtcacagcattaaggttga 615

                                                                       
Query: 421 gagtcactgctttaggttgagcaggtatttcaggccaacgataaccttcacctgaccctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gagtcactgctttaggttgagcaggtatttcaggccaacgataaccttcacctgaccctt 675

                                                                       
Query: 481 aggttcacagcagaggcccggcttcagcggaggccgttcacatacctgcccttcggagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 676 aggttcacagcagaggcccggcttcagcggaggccgttcacatacctgccctttggagct 735

                                                        
Query: 541 ggccccaggagctgcctcggagtgcggctgggcctgctggtggtc 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggccccaggagctgcctcggagtgcggctgggcctgctggtggtc 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)