Query= MSMg01no302_j24.b1 MSMg01no302_j24.b1 CHROMAT_FILE:
MSMg01no302_j24.b1 PHD_FILE: MSMg01no302_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:18 2005
(706 letters)
>mm_chr6_77458512_77459617
Length = 1106
Score = 1241 bits (642), Expect = 0.0
Identities = 690/706 (97%), Gaps = 5/706 (0%)
Strand = Plus / Minus
Query: 4 gaattctcatcacataccctctctcagaaagctgtggagttttctctttcaaatctgact 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattctcatcacatactctctctcagaaagctgtggagttttctctttcaaatctgact 656
Query: 64 tgaacctcctgggccatgtcttaggagactgaaacagaactcaacattatctttcaagct 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 655 tgaacctcctgggccatgtcttaggagactgaaacagaactcaacatcatctttcaagct 596
Query: 124 ggcctcactaactagtctcttggccaattccatcaggagattcttaataaacaaggtaaa 183
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 595 ggcctcactaactagcctcttggccaattccatcaggaaattcttaataaacaaggtaaa 536
Query: 184 atcatcaaagactttttaagttgtccctgatgttctggatgatcataaaaagaaatctca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atcatcaaagactttttaagttgtccctgatgttctggatgatcataaaaagaaatctca 476
Query: 244 taaggaatatccttcatacttagtt-ggcccgtaccctctc-aaaaaataatggtggtga 301
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct: 475 taaggaatatccttcatacttagttgggcacgtaccctctcaaaaaaataatggtggtga 416
Query: 302 tatattttctcttgtgttccaagactctttttctagccccaaattcatatagaatttgga 361
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 415 tatattttctcttgtgttccaaga-tctttttctagccccaaattcatatagaatttgga 357
Query: 362 aagtatcaaaatctctataaaaatgggactctccccatatagattcaagtagaataagaa 421
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aagtatcaaaatctctat-aaaatgggactctccccatatagattcaagtagaataagaa 298
Query: 422 ggctcattggggagatagctgtaggagaatgataagctgtcttctgcaaattttagagtc 481
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 297 ggctcattggggagatagctgtaggagaatgataagctgtcttctgtaaattttagagtt 238
Query: 482 tactgtatattaaaaactttaaggactgttaaattggttaagcagttagaggacttcctg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tactgtatattaaaaactttaaggactgttaaattggttaagcagttagaggacttcctg 178
Query: 542 cttcttcactgaaccccaagttggttcctagcattcatatggtagcagctcacaatcatc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cttcttcactgaaccccaagttggttcctagcattcatatggtagcagctcacaatcatc 118
Query: 602 tgcaagtctagttttatagcatctgagacctgctggcctctgtggtcaccaggcatgtgc 661
||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||
Sbjct: 117 tgcaagtctagttttatagcacctgagacccgctggcctctgtgttcaccaggcatgtgc 58
Query: 662 atacagtacata-attaagtcaatacactcatacacatttaaaaca 706
|||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 57 atacagtacatacattaagtcaaaacactcatacacatttaaaaca 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no302_j24.g1 MSMg01no302_j24.g1 CHROMAT_FILE:
MSMg01no302_j24.g1 PHD_FILE: MSMg01no302_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:18 2005
(340 letters)
>mm_chr6_77353013_77353752
Length = 740
Score = 634 bits (328), Expect = 0.0
Identities = 337/340 (99%)
Strand = Plus / Plus
Query: 1 ttacagcagttttgttctagagttgtggtaatgcaacctgaagtgttacatgattacagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttacagcagttttgttctagagttgtggtaatgtaacctgaagtgttacatgattacagg 260
Query: 61 tgtacagttttatatagtaagtgacctagcaaaaatgcaataataagcatggtatattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tgtacagttttatatagtaagtgacctagcaaaaatgcaataataagcatggtgtattac 320
Query: 121 aaggctaattttgtcttaaatgtcttcatccatgggttacattgaggaaaagctggttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggctaattttgtcttaaatgtcttcatccatgggttacattgaggaaaagctggttta 380
Query: 181 tctgtttcctctgcaggcagttcaaagaattcgcagtattaagggaataaataaatggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtttcctctgcaggcagttcaaagaattcgcagtattaagggaataaataaatggac 440
Query: 241 tttggaagatttttcttttctgcttggacatggccttgtgaagaatctcaaggctgtttt 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tttggaagatttttcttttctgcttggacatggccttgtgaagactctcaaggctgtttt 500
Query: 301 ctgtgtccacaaggatcaggagttaaaggcatttctttta 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgtccacaaggatcaggagttaaaggcatttctttta 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
