BAC Information

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BAC

Clone NameMSMg01-302K06
Chromosome6 (Build37)
Map Location 91,068,225 - 91,068,471
singlet/doubletsinglet
Overlap genenone
Upstream geneV1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210
Downstream geneHdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302K06.T7 (MSMg01no302_k06.b1)MSMg01-302K06.TJ (MSMg01no302_k06.g1)
ACCAG428472AG428473
length739818
length of high quality
(start - end)
111 (154 - 264)293 (91 - 383)
definitionCHROMAT_FILE: MSMg01no302_k06.b1 PHD_FILE: MSMg01no302_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:19 2005CHROMAT_FILE: MSMg01no302_k06.g1 PHD_FILE: MSMg01no302_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATAT
TCACTTGGACCTCACTAAAGATCAAAGTGGGTGTGTCCCCCATTACCCTG
GGACACACTCCAAGATCTCTACTACCCACCTAAAATTGTGGGTGGCCCTT
AGTCCTATGGATCTTGTGTTTTTGTTTTATATGCTTGCCTATCTTTTTTT
TTTTTTTCTCCAAGACAGGGTTTCTCTGCATAGCCCTGGCTGTCCTGAAA
TTCACTCTGTAAACCAGGCTGGTCTACAAAAAAATCTTAAAATCAGAAAT
CTGCCTGCCTCTGCCTCCCAAGTGCTGTCATTAAAGGCGTGTGCCACTAC
TGCCTGGCATGATCATTCATTTTATCACTCGCACCATGGTAAGATATTGT
GACAGAAATAGTACAGGGCAGTAGCTATACCATGGACCATATGCTCTGGG
GCGCTGTAACAAAAGCAATGTGCCTGCTCTCTCCCCTCTCCTCCCTACCC
TACTCCCTGTCACTCAGAGAAAGCTCTTCGCTTCACTTCTTCCTTACATG
AGGGAGCACTCACAGTTCTTCATATGACTGGAGCACTTATGGATTCTCTT
TGTCTGAAGGGAGCACATTTGGCTCCTCTTCCCTTGAGGAGAGCATTCCC
AGATCCCCTTCCCATGAAGAGTTCTATCAGTCCCGTTTCTTGTGTTGTGA
AAACATACCATGACCATGGAACGCCTGGTCATGTAATGA
NATTGCTTNNNNATTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTGACAG
ATCCATTCTTCATCCAGGACCTGCTATGGGCAGCCAGTGTCTTCCACATA
GGATGCATTAGTAAGTTTGAGAGTGCCTGGATCCCATGGCAGGCAGGTAA
CCAAGATACATAAAACAGACCTGGTAGGACACAAGGAGACTGTAGTCTTT
AGACCATTATGATCACAGGACCCTTTGGTTGCAGCTCTCTGGTTATCCAG
ACGTCAGTAACATATATATATGTGTGTGTGTGTGTATATATATATATATA
TATATATATATATATATATATATATATACATATATTTATTTTTCCCCATA
CGNCCCCCCGTGTTTATATATTTTGTATATTTGTTTTTCCTCTTTTTTTA
TAAAAAAAAAAAAAAAATCTGGGGGGGGGGGTGGTGTGTTTTTTTCACCT
AATTTTTTACATTTTTTCTTTTTTTTTTTTTCTTCCACTTATTTTTTCCA
CGACTCTTCCATTTATTATTACCATCTTTCTATATTTTTTAATCGTTTTT
ACGTATTTTTTCTCCCCCTTTTACCTTATAAGACTATTTACCTCTCTTCG
CTCCCTCCACCTTTTATTCTTCTTATTTTTATTTTTTCCCCTCACTATCC
CTTTATTTGCCGTGTATTATTCTCCACCCTCCTTTCTTTTACTCTAAGCC
CCATTGTTTCGCCCATTTTATCCTCACTTTATTTTTCTCCTCCTTTTCTC
CCCCTATATCCTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_k06.g1 MSMg01no302_k06.g1 CHROMAT_FILE:
MSMg01no302_k06.g1 PHD_FILE: MSMg01no302_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:19 2005
         (293 letters)



>mm_chr6_91068025_91068717
          Length = 693

 Score =  462 bits (239), Expect = e-134
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtgacagatccattcttcatccaggacctgctatgggcagccagtgtcttccacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtgacagatccattcttcatccaggacctgctatgggcagccagtgtcttccacata 260

                                                                       
Query: 61  ggatgcattagtaagtttgagagtgcctggatcccatggcaggcaggtaaccaagataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgcattagtaagtttgagagtgcctggatcccatggcaggcaggtaaccaagataca 320

                                                                       
Query: 121 taaaacagacctggtaggacacaaggagactgtagtctttagaccattatgatcacagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaacagacctggtaggacacaaggagactgtagtctttagaccattatgatcacagga 380

                                                                       
Query: 181 ccctttggttgcagctctctggttatccagacgtcagtaacatatatatatgtgtgtgtg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 ccctttggttgcagttctctggttatccagacgtcagtaacatatatatatatgtgtgtg 440

                  
Query: 241 tgtgtat 247
           |||||||
Sbjct: 441 tgtgtat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)