BAC Information

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BAC

Clone NameMSMg01-303B07
Chromosome6 (Build37)
Map Location 90,456,612 - 90,617,456
singlet/doubletdoublet
Overlap geneAldh1l1, Slc41a3, Iqsec1
Upstream geneChchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15
Downstream geneLOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303B07.T7 (MSMg01no303_b07.b1)MSMg01-303B07.TJ (MSMg01no303_b07.g1)
ACCAG428774AG428775
length725731
length of high quality
(start - end)
346 (67 - 412)442 (73 - 514)
definitionCHROMAT_FILE: MSMg01no303_b07.b1 PHD_FILE: MSMg01no303_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:53 2005CHROMAT_FILE: MSMg01no303_b07.g1 PHD_FILE: MSMg01no303_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,617,111 - 90,617,456)(90,456,612 - 90,457,053)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAATTC
CAGGCCTCTGCTAGACCAAAGCCACTGCTGCAGTAGGTGTAGAGCTCCAG
GGTGTGGGGATAACCGTGGTAGAAGCTGTTCACCATCAGTGATGTTGCCT
TGTTTCTGTGGTTTAATTTGGTGCCAGCCACTTAACCCCAGAAAGTGGGA
GCCCTCACGCCTCCTAGGTTTCTTATAGGTAGAGAGTACTATGAGGCTAG
GGAAGCTGCTTTCAGTGTCTCCTCCAGCCTTGGAGAGGAAACACTCGCTG
TCAGAGCAGCAGCCCCTTATCTACCACCAGTGTCCATCCAGTCAGTGTGC
ACGGAACAGTGTGACCTGGTCTTATTGTGGGGCCCTCCGAGCCTGTCCAG
TACTCCCTGCCTGCCCTCCCATCATAGCTCTGCCTCATACTGCTTTCTCA
TTTCTCACGAATTGTCTTCTCCTTTTTTGAGTTTTCTTCGCTTTTGCCAT
TTTTTTTTTCATAGTGAGAACCTGACTCTCACCACCAGCATGAGGGTTTA
TGCAAGGGCTTCTCACCCTGGACACTGCATACACTCTGGTGCAGATAACT
GCCTGCCTTTGCACTGTGCCTGTTCTCACTGACGTCATCATCTCTTGCCC
TTTCGCGACACCCTGTTGCATCTCCCTATATGTCATTTGTCTTATGACTC
CTGGTTGAATACCATTATCCCCCCA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTTCAGCTGGAAGGGCTCCTTGCCC
TGGTGGTTTTCCTTGAATGTCTTATTTCAGTGTCCTTCTCAGGCAGTAGC
TTTTTGCAGGGATGTTGCAGGAAAGGAGAGGTGACCGACCCTCCCCATTC
CAGCCTTCCTGCCACAGCCTGCCGGAGGAAAGGGATACTTCATCCACCAT
GAGCGAGCGTTCAGGGATCCATCTCCAAGCAAAATATTTTTTCGTGAAGG
AGCTTGCTTTACGTCAGTTGGTATTTTGGTCAAGAGTTACAGAATGTACT
TCATATCGAGTTAAAAAACACACAGCCTTTAAAACCAAGCCTTTCCCGTG
AGCCCAGACTCGAGACTGTTGCTTTTCTCACACCTTGGACACGTAGGAAA
ATGTGTGCTTAGGGAGATGGCCGGATGCCCGCCTGGGGAAAGTGCCAAGC
TGGGTGAATGCTACACGCAGGGGCTCGGTTTGTTGTTTGCTGGACTTTGA
ATAGCTGCTAAGAGTCCCTCCAGAGCCTCCAGGCACTGTGGTCCTGCCCA
GCCCAAGTCTGGGTTGCTGCCATCCTTCCCAACGGGGACAGCCCTCCACC
GTGTAGGGAGCCTGTGTGGTTCTGCTCACTGCTTGTTTCGGCAGACTGCT
GTGTCATTTGCATCCCTTTCATGATCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_b07.b1 MSMg01no303_b07.b1 CHROMAT_FILE:
MSMg01no303_b07.b1 PHD_FILE: MSMg01no303_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
         (346 letters)



>mm_chr6_90616911_90617656
          Length = 746

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagccactgctgcagtaggtgtagagctccagggtgtggggataaccgtggtagaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caaagccactgctgcagtaggtgtagagctccagggtgtggggataaccgtggtagaagc 487

                                                                       
Query: 61  tgttcaccatcagtgatgttgccttgtttctgtggtttaatttggtgccagccacttaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgttcaccatcagtgatgttgccttgtttctgtggtttaatttggtgccagccacttaac 427

                                                                       
Query: 121 cccagaaagtgggagccctcacgcctcctaggtttcttataggtagagagtactatgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cccagaaagtgggagccctcacgcctcctaggtttcttataggtagagagtactatgagg 367

                                                                       
Query: 181 ctagggaagctgctttcagtgtctcctccagccttggagaggaaacactcgctgtcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctagggaagctgctttcagtgtctcctccagccttggagaggaaacactcgctgtcagag 307

                                                                       
Query: 241 cagcagccccttatctaccaccagtgtccatccagtcagtgtgcacggaacagtgtgacc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cagcagccccttaactaccaccagtgtccatccagtcagtgtgcacggaacagtgtgacc 247

                                                         
Query: 301 tggtcttattgtggggccctccgagcctgtccagtactccctgcct 346
           ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 246 tgggcttattgtggggccctccgagcctgtccagcactccctgcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no303_b07.g1 MSMg01no303_b07.g1 CHROMAT_FILE:
MSMg01no303_b07.g1 PHD_FILE: MSMg01no303_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
         (442 letters)



>mm_chr6_90456412_90457253
          Length = 842

 Score =  855 bits (442), Expect = 0.0
 Identities = 442/442 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcttcagctggaagggctccttgccctggtggttttccttgaatgtcttatttcagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttcagctggaagggctccttgccctggtggttttccttgaatgtcttatttcagtg 260

                                                                       
Query: 61  tccttctcaggcagtagctttttgcagggatgttgcaggaaaggagaggtgaccgaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttctcaggcagtagctttttgcagggatgttgcaggaaaggagaggtgaccgaccct 320

                                                                       
Query: 121 ccccattccagccttcctgccacagcctgccggaggaaagggatacttcatccaccatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccattccagccttcctgccacagcctgccggaggaaagggatacttcatccaccatga 380

                                                                       
Query: 181 gcgagcgttcagggatccatctccaagcaaaatattttttcgtgaaggagcttgctttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgagcgttcagggatccatctccaagcaaaatattttttcgtgaaggagcttgctttac 440

                                                                       
Query: 241 gtcagttggtattttggtcaagagttacagaatgtacttcatatcgagttaaaaaacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagttggtattttggtcaagagttacagaatgtacttcatatcgagttaaaaaacaca 500

                                                                       
Query: 301 cagcctttaaaaccaagcctttcccgtgagcccagactcgagactgttgcttttctcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcctttaaaaccaagcctttcccgtgagcccagactcgagactgttgcttttctcaca 560

                                                                       
Query: 361 ccttggacacgtaggaaaatgtgtgcttagggagatggccggatgcccgcctggggaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttggacacgtaggaaaatgtgtgcttagggagatggccggatgcccgcctggggaaag 620

                                 
Query: 421 tgccaagctgggtgaatgctac 442
           ||||||||||||||||||||||
Sbjct: 621 tgccaagctgggtgaatgctac 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)