BAC Information

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BAC

Clone NameMSMg01-303I03
Chromosome6 (Build37)
Map Location 20,803,940 - 20,804,097
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303I03.T7 (MSMg01no303_i03.b1)MSMg01-303I03.TJ (MSMg01no303_i03.g1)
ACCAG429084AG429085
length746705
length of high quality
(start - end)
166 (52 - 217)157 (79 - 235)
definitionCHROMAT_FILE: MSMg01no303_i03.b1 PHD_FILE: MSMg01no303_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:26 2005CHROMAT_FILE: MSMg01no303_i03.g1 PHD_FILE: MSMg01no303_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAATTTTAACAATGGTATTGGTATAGGAAATCATTCCCA
TTTTCTTCAAAGGAAGAAGAAACATTTATAAGTAGATTAACATAAGATAT
ATAACTATGCTATCTTGGAACAGCAAATAATCCACACAGACATAAAAACT
TGAAAGAAGCATTNTNANNTAAGGAAGGAAAATATTTGGGATTAATTTTG
ATAANCAATCCAGAAGAGAAAACNNAGTACACCAAAATTACCCCAATTAT
AGGAATAATAGAGTATAGGAGCTAGACCGGCAGGGAAAAAATGTAACAAT
TGTGGGGAAAAAAATTCTAAACTGGTTTCCAAAGCCAAATCTGGAAAGGG
AAACGCATTGGAGGGACCTTAAAGGGCTTTTCAATGGGGGGGAAAAAAAA
CCCCCTTTAAAAAAAAAGGGGGGGAGGGGAACACCCTCCTCCTTTTTTTA
ACCAAAGGGCCCCCTCCCTTTTTTAAAAATTTTTTTTCTAAAAAAACCAT
CCCCCCAAAACAATTTTTTTATTATTTTTGGGGGGGGGGAAAAAATTTTT
TGGAGGGAACTTTTTTTAAAAAGGGGGGGGGGCGGAAAACCCCCCCCCCT
CAATCGAAAAAAAAAAAATCTTTTTTCTTTAGGCGCGGGTCCCCCCCCAC
AGAAAAAAAAAAAAAAAACCCCGCCCCACGTTTTTTCTTTTAAAAG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTAT
CAAGAATGGATGTTGGATTTTGTCAAATGCTTTCTCCAAATCTAATGAGA
AGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATACTGTATTATGTTG
ATGGATTTCCGTATATTGAACTGTCACTGCATCCTTCTGGNNAATGGNAA
ACTCTAACTTTGGGNTCAGGAATGGATGAATTNGGTCTTGAAAATGTTCC
TAGGATCTTTTTTGCATTTTCAGTTTTTTTAATGGTGGACCAAAGTCTCC
CAAGGAACCTTCTGGACCCCGGAAAAAAAATTTTTTCCCCCCCCCTCGGG
AGACCCGGGGGGGGAGGGGGGGCCCCCTATTTGGGGGGCCAAAAATTTTC
CCCCCCCCNNNNNNTTTTTTTTTCCCCNNNTTTCTGCTCTCTGGNNNGGN
NNNNTNTNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGAGTAGANATGN
AGNAGGNNNNNNNNNNNNNNTTNNNNNNNNNNAGGAATAGGGGGTTCTTT
TTCTTTTGGGGNNNNNNNGGGGAGGATTGTCTCTACTCCCNCCCGGGTTG
GGNCGTGTGGCGGGCCTTTTTTTTGAGGAAAAAANGNGCGCGGGTGGGTT
TATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_i03.b1 MSMg01no303_i03.b1 CHROMAT_FILE:
MSMg01no303_i03.b1 PHD_FILE: MSMg01no303_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:26 2005
         (166 letters)



>mm_chr6_20803736_20804301
          Length = 566

 Score =  290 bits (150), Expect = 3e-83
 Identities = 156/158 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaattttaacaatggtattggtataggaaatcattcccattttcttcaaaggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaattccaattttaacaatggtattggtataggaaatcattcccattttcttcaaaggaa 303

                                                                       
Query: 65  gaagaaacatttataagtagattaacataagatatataactatgctatcttggaacagca 124
           || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 302 gaggaaacatttataagtagattaacataaggtatataactatgctatcttggaacagca 243

                                                 
Query: 125 aataatccacacagacataaaaacttgaaagaagcatt 162
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aataatccacacagacataaaaacttgaaagaagcatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)