BAC Information

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BAC

Clone NameMSMg01-303J16
Chromosome6 (Build37)
Map Location 105,056,515 - 105,097,699
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn6, LOC384470
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303J16.T7 (MSMg01no303_j16.b1)MSMg01-303J16.TJ (MSMg01no303_j16.g1)
ACCAG429151AG429152
length740744
length of high quality
(start - end)		698 (43 - 740)672 (73 - 744)
definitionCHROMAT_FILE: MSMg01no303_j16.b1 PHD_FILE: MSMg01no303_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:33 2005CHROMAT_FILE: MSMg01no303_j16.g1 PHD_FILE: MSMg01no303_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,097,005 - 105,097,699)(105,056,515 - 105,057,186)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTTCATCTCTTCTTTTTGCTTTCCCATGCACCTATACTTCTCATCTC
AATAAAATTCTCTAGATCATAACATGTGCTTGTCACGGAGGCAGTCTCAT
TCCATCTATAGTGTTAGACCTTGCAGGTGACAAAGACAAATATGTCCTTT
TCAGCTTTGATAAGTTCATAGTAATACCTAAAACATTTTCCTTCACCTTT
CTATTGTCATATGCATCCATATGCCATAAATAGTAGACCACAGTTACAAC
ACAGCTAAAACATGGACTGATTCCTGGTTGTTATGAAATTCCTGAGAAAA
CCCTAAGTACACAGTGTCCCTGTTACCTAATTGCTTTTGTTCTCAGCTTT
GTTCATCCCTGCTTGCTCACCTAATTCTGGCTTGCATTTTTCTTCTTATT
ACCTTATTGGCTAGTTCGAACCAACTTGGCATGATACTTGATATTTAAAT
ATGTTATATCCCAAAGCTTAGCATAATCCATTAAGTCAAACACTACTGAA
ATCATTAGTGCTTTCCTATTGGGATACAATTCATTGAGTTAAAATCTTTT
CAACTTGCCAAACAAGTAAAAAACCAGAAAAGGGATTCGTACAAGGTAAC
CTCTTGCCAGACTTGCAGTCTTATTTTCTAAGCTGCTCTGCAACTTTCTT
TAGTGACAGTTGATTGAAACTACATTGCGTTCATTAATTG

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCCAACAAACTATTTTCAATGATGCA
ACATAGGCCATCTTATTATTTGAAGGAGAGTGGGTCACATTGCATATCCT
TCAATCTTCAAAATCAAGGCATATCAAAAATTGTGTACAAAATACAAAAT
ATGATTACTTCAATGCACGTCTATCTTTTAAAATTTGAAATGCGAAAATT
TCAATACATCTGCAAATAAAACTAAAAAATGTGTTACTAAAAAGAAAGAG
GAAAATTGAAGCCAATTAATTATAAAATTTCTTCATAAAAAGGTATGCAA
ATGAGCATATCTACAGTGTAAAAAAAGTTTAAATACATACACAATTGAAG
TAAACCTGTTCCCTTTTATAAAATATTCAAATTCATATGACCTGACTTTA
ACTAGGAGCTGCGTAGCTTTCACTGTTCAACAATACACATGGAGTGAGTT
TAAAAACCAAAAATCATGGCTTAGAATTTAGAAACATGGGCAATTTCTTA
AGGATTGATTAGCACTCAAAGCTTTTTTATTTCTCTATATAGATGTAGCA
CAACATCACTAATTTTTTCTCTTAATCATGGCATATATAAATACAAGTTT
ATAAGCATTATAATATTATTCATGAAATATCTACAGGCTTCATAATATAT
GCTACTACGTTGCATTTCTAATTGTTATCTGAAGATTCTATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_j16.b1 MSMg01no303_j16.b1 CHROMAT_FILE:
MSMg01no303_j16.b1 PHD_FILE: MSMg01no303_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:33 2005
         (698 letters)



>mm_chr6_105096802_105097899
          Length = 1098

 Score = 1328 bits (687), Expect = 0.0
 Identities = 693/695 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttcatctcttctttttgctttcccatgcacctatacttctcatctcaataa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ggaattcatttcatctcttctttttgctttcccatgcacctatacttctcatctcaataa 839

                                                                       
Query: 64  aattctctagatcataacatgtgcttgtcacggaggcagtctcattccatctatagtgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aattctctagatcataacatgtgcttgtcacggaggcagtctcattccatctatagtgtt 779

                                                                       
Query: 124 agaccttgcaggtgacaaagacaaatatgtccttttcagctttgataagttcatagtaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 agaccttgcaggtgacaaagacaaatatgtccttttcagctttgataagttcatagtaat 719

                                                                       
Query: 184 acctaaaacattttccttcacctttctattgtcatatgcatccatatgccataaatagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acctaaaacattttccttcacctttctattgtcatatgcatccatatgccataaatagta 659

                                                                       
Query: 244 gaccacagttacaacacagctaaaacatggactgattcctggttgttatgaaattcctga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaccacagttacaacacagctaaaacatggactgattcctggttgttatgaaattcctga 599

                                                                       
Query: 304 gaaaaccctaagtacacagtgtccctgttacctaattgcttttgttctcagctttgttca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaaaaccctaagtacacagtgtccctgttacctaattgcttttgttctcagctttgttca 539

                                                                       
Query: 364 tccctgcttgctcacctaattctggcttgcatttttcttcttattaccttattggctagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tccctgcttgctcacctaattctggcttgcatttttcttcttattaccttattggctagt 479

                                                                       
Query: 424 tcgaaccaacttggcatgatacttgatatttaaatatgttatatcccaaagcttagcata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcgaaccaacttggcatgatacttgatatttaaatatgttatatcccaaagcttagcata 419

                                                                       
Query: 484 atccattaagtcaaacactactgaaatcattagtgctttcctattgggatacaattcatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atccattaagtcaaacactactgaaatcattagtgctttcctattgggatacaattcatt 359

                                                                       
Query: 544 gagttaaaatcttttcaacttgccaaacaagtaaaaaaccagaaaagggattcgtacaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagttaaaatcttttcaacttgccaaacaagtaaaaaaccagaaaagggattcgtacaag 299

                                                                       
Query: 604 gtaacctcttgccagacttgcagtcttattttctaagctgctctgcaactttctttagtg 663
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 298 gtaacctcttgccagacttgcagtcttatgttctaagctgctctgcaactttctttagtg 239

                                              
Query: 664 acagttgattgaaactacattgcgttcattaattg 698
           |||||||||||||||||||||||| ||||||||||
Sbjct: 238 acagttgattgaaactacattgcgctcattaattg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_j16.g1 MSMg01no303_j16.g1 CHROMAT_FILE:
MSMg01no303_j16.g1 PHD_FILE: MSMg01no303_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:33 2005
         (672 letters)



>mm_chr6_105056315_105057386
          Length = 1072

 Score = 1276 bits (660), Expect = 0.0
 Identities = 669/672 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccaacaaactattttcaatgatgcaacataggccatcttattatttgaaggagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccaacaaactattttcaatgatgcaacataggccatcttattatttgaaggagagtg 260

                                                                       
Query: 61  ggtcacattgcatatccttcaatcttcaaaatcaaggcatatcaaaaattgtgtacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcacattgcatatccttcaatcttcaaaatcaaggcatatcaaaaattgtgtacaaaa 320

                                                                       
Query: 121 tacaaaatatgattacttcaatgcacgtctatcttttaaaatttgaaatgcgaaaatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaaaatatgattacttcaatgcacgtctatcttttaaaatttgaaatgcgaaaatttc 380

                                                                       
Query: 181 aatacatctgcaaataaaactaaaaaatgtgttactaaaaagaaagaggaaaattgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacatctgcaaataaaactaaaaaatgtgttactaaaaagaaagaggaaaattgaagc 440

                                                                       
Query: 241 caattaattataaaatttcttcataaaaaggtatgcaaatgagcatatctacagtgtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caattaattataaaatttcttcataaaaaggtatgcaaatgagcatatctacagtgtaaa 500

                                                                       
Query: 301 aaaagtttaaatacatacacaattgaagtaaacctgttcccttttataaaatattcaaat 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatagtttaaatacatacacaattgaagtaaacctgttcccttttataaaatattcaaat 560

                                                                       
Query: 361 tcatatgacctgactttaactaggagctgcgtagctttcactgttcaacaatacacatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatatgacctgactttaactaggagctgcgtagctttcactgttcaacaatacacatgg 620

                                                                       
Query: 421 agtgagtttaaaaaccaaaaatcatggcttagaatttagaaacatgggcaatttcttaag 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgagtttaaaaagcaaaaatcatggcttagaatttagaaacatgggcaatttcttaag 680

                                                                       
Query: 481 gattgattagcactcaaagcttttttatttctctatatagatgtagcacaacatcactaa 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 gattgattagcactcaaagcttttttatttccctatatagatgtagcacaacatcactaa 740

                                                                       
Query: 541 ttttttctcttaatcatggcatatataaatacaagtttataagcattataatattattca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttttctcttaatcatggcatatataaatacaagtttataagcattataatattattca 800

                                                                       
Query: 601 tgaaatatctacaggcttcataatatatgctactacgttgcatttctaattgttatctga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaaatatctacaggcttcataatatatgctactacgttgcatttctaattgttatctga 860

                       
Query: 661 agattctatgaa 672
           ||||||||||||
Sbjct: 861 agattctatgaa 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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