BAC Information

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BAC

Clone NameMSMg01-303K13
Chromosome6 (Build37)
Map Location 105,056,515 - 105,097,699
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn6, LOC384470
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303K13.T7 (MSMg01no303_k13.b1)MSMg01-303K13.TJ (MSMg01no303_k13.g1)
ACCAG429189AG429190
length744745
length of high quality
(start - end)		702 (43 - 744)673 (73 - 745)
definitionCHROMAT_FILE: MSMg01no303_k13.b1 PHD_FILE: MSMg01no303_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:37 2005CHROMAT_FILE: MSMg01no303_k13.g1 PHD_FILE: MSMg01no303_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,097,001 - 105,097,699)(105,056,515 - 105,057,186)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTTCATCTCTTCTTTTTGCTTTCCCATGCACCTATACTTCTCATCTC
AATAAAATTCTCTAGATCATAACATGTGCTTGTCACGGAGGCAGTCTCAT
TCCATCTATAGTGTTAGACCTTGCAGGTGACAAAGACAAATATGTCCTTT
TCAGCTTTGATAAGTTCATAGTAATACCTAAAACATTTTCCTTCACCTTT
CTATTGTCATATGCATCCATATGCCATAAATAGTAGACCACAGTTACAAC
ACAGCTAAAACATGGACTGATTCCTGGTTGTTATGAAATTCCTGAGAAAA
CCCTAAGTACACAGTGTCCCTGTTACCTAATTGCTTTTGTTCTCAGCTTT
GTTCATCCCTGCTTGCTCACCTAATTCTGGCTTGCATTTTTCTTCTTATT
ACCTTATTGGCTAGTTCGAACCAACTTGGCATGATACTTGATATTTAAAT
ATGTTATATCCCAAAGCTTAGCATAATCCATTAAGTCAAACACTACTGAA
ATCATTAGTGCTTTCCTATTGGGATACAATTCATTGAGTTAAAATCTTTT
CAACTTGCCAAACAAGTAAAAAACCAGAAAAGGGATTCGTACAAGGTAAC
CTCTTGCCAGACTTGCAGTCTTATTTTCTAAGCTGCTCTGCAACTTTCTT
TAGTGACAGTTGATTGAAACTACATTGCGTTCATTAATTGATTC

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCCAACAAACTATTTTCAATGATGCA
ACATAGGCCATCTTATTATTTGAAGGAGAGTGGGTCACATTGCATATCCT
TCAATCTTCAAAATCAAGGCATATCAAAAATTGTGTACAAAATACAAAAT
ATGATTACTTCAATGCACGTCTATCTTTTAAAATTTGAAATGCGAAAATT
TCAATACATCTGCAAATAAAACTAAAAAATGTGTTACTAAAAAGAAAGAG
GAAAATTGAAGCCAATTAATTATAAAATTTCTTCATAAAAAGGTATGCAA
ATGAGCATATCTACAGTGTAAAAAAAGTTTAAATACATACACAATTGAAG
TAAACCTGTTCCCTTTTATAAAATATTCAAATTCATATGACCTGACTTTA
ACTAGGAGCTGCGTAGCTTTCACTGTTCAACAATACACATGGAGTGAGTT
TAAAAACCAAAAATCATGGCTTAGAATTTAGAAACATGGGCAATTTCTTA
AGGATTGATTAGCACTCAAAGCTTTTTTATTTCTCTATATAGATGTAGCA
CAACATCACTAATTTTTTCTCTTAATCATGGCATATATAAATACAAGTTT
ATAAGCATTATAATATTATTCATGAAATATCTACAGGCTTCATAATATAT
GCTACTACGTTGCATTTCTAATTGTTATCTGAAGATTCTATGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_k13.b1 MSMg01no303_k13.b1 CHROMAT_FILE:
MSMg01no303_k13.b1 PHD_FILE: MSMg01no303_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:37 2005
         (702 letters)



>mm_chr6_105096798_105097899
          Length = 1102

 Score = 1336 bits (691), Expect = 0.0
 Identities = 697/699 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttcatctcttctttttgctttcccatgcacctatacttctcatctcaataa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ggaattcatttcatctcttctttttgctttcccatgcacctatacttctcatctcaataa 843

                                                                       
Query: 64  aattctctagatcataacatgtgcttgtcacggaggcagtctcattccatctatagtgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aattctctagatcataacatgtgcttgtcacggaggcagtctcattccatctatagtgtt 783

                                                                       
Query: 124 agaccttgcaggtgacaaagacaaatatgtccttttcagctttgataagttcatagtaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 agaccttgcaggtgacaaagacaaatatgtccttttcagctttgataagttcatagtaat 723

                                                                       
Query: 184 acctaaaacattttccttcacctttctattgtcatatgcatccatatgccataaatagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 acctaaaacattttccttcacctttctattgtcatatgcatccatatgccataaatagta 663

                                                                       
Query: 244 gaccacagttacaacacagctaaaacatggactgattcctggttgttatgaaattcctga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gaccacagttacaacacagctaaaacatggactgattcctggttgttatgaaattcctga 603

                                                                       
Query: 304 gaaaaccctaagtacacagtgtccctgttacctaattgcttttgttctcagctttgttca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaaaaccctaagtacacagtgtccctgttacctaattgcttttgttctcagctttgttca 543

                                                                       
Query: 364 tccctgcttgctcacctaattctggcttgcatttttcttcttattaccttattggctagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tccctgcttgctcacctaattctggcttgcatttttcttcttattaccttattggctagt 483

                                                                       
Query: 424 tcgaaccaacttggcatgatacttgatatttaaatatgttatatcccaaagcttagcata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcgaaccaacttggcatgatacttgatatttaaatatgttatatcccaaagcttagcata 423

                                                                       
Query: 484 atccattaagtcaaacactactgaaatcattagtgctttcctattgggatacaattcatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atccattaagtcaaacactactgaaatcattagtgctttcctattgggatacaattcatt 363

                                                                       
Query: 544 gagttaaaatcttttcaacttgccaaacaagtaaaaaaccagaaaagggattcgtacaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gagttaaaatcttttcaacttgccaaacaagtaaaaaaccagaaaagggattcgtacaag 303

                                                                       
Query: 604 gtaacctcttgccagacttgcagtcttattttctaagctgctctgcaactttctttagtg 663
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 302 gtaacctcttgccagacttgcagtcttatgttctaagctgctctgcaactttctttagtg 243

                                                  
Query: 664 acagttgattgaaactacattgcgttcattaattgattc 702
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 242 acagttgattgaaactacattgcgctcattaattgattc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no303_k13.g1 MSMg01no303_k13.g1 CHROMAT_FILE:
MSMg01no303_k13.g1 PHD_FILE: MSMg01no303_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:37 2005
         (673 letters)



>mm_chr6_105056315_105057387
          Length = 1073

 Score = 1276 bits (660), Expect = 0.0
 Identities = 669/672 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccaacaaactattttcaatgatgcaacataggccatcttattatttgaaggagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccaacaaactattttcaatgatgcaacataggccatcttattatttgaaggagagtg 260

                                                                       
Query: 61  ggtcacattgcatatccttcaatcttcaaaatcaaggcatatcaaaaattgtgtacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcacattgcatatccttcaatcttcaaaatcaaggcatatcaaaaattgtgtacaaaa 320

                                                                       
Query: 121 tacaaaatatgattacttcaatgcacgtctatcttttaaaatttgaaatgcgaaaatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaaaatatgattacttcaatgcacgtctatcttttaaaatttgaaatgcgaaaatttc 380

                                                                       
Query: 181 aatacatctgcaaataaaactaaaaaatgtgttactaaaaagaaagaggaaaattgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacatctgcaaataaaactaaaaaatgtgttactaaaaagaaagaggaaaattgaagc 440

                                                                       
Query: 241 caattaattataaaatttcttcataaaaaggtatgcaaatgagcatatctacagtgtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caattaattataaaatttcttcataaaaaggtatgcaaatgagcatatctacagtgtaaa 500

                                                                       
Query: 301 aaaagtttaaatacatacacaattgaagtaaacctgttcccttttataaaatattcaaat 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatagtttaaatacatacacaattgaagtaaacctgttcccttttataaaatattcaaat 560

                                                                       
Query: 361 tcatatgacctgactttaactaggagctgcgtagctttcactgttcaacaatacacatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatatgacctgactttaactaggagctgcgtagctttcactgttcaacaatacacatgg 620

                                                                       
Query: 421 agtgagtttaaaaaccaaaaatcatggcttagaatttagaaacatgggcaatttcttaag 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgagtttaaaaagcaaaaatcatggcttagaatttagaaacatgggcaatttcttaag 680

                                                                       
Query: 481 gattgattagcactcaaagcttttttatttctctatatagatgtagcacaacatcactaa 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 gattgattagcactcaaagcttttttatttccctatatagatgtagcacaacatcactaa 740

                                                                       
Query: 541 ttttttctcttaatcatggcatatataaatacaagtttataagcattataatattattca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttttctcttaatcatggcatatataaatacaagtttataagcattataatattattca 800

                                                                       
Query: 601 tgaaatatctacaggcttcataatatatgctactacgttgcatttctaattgttatctga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaaatatctacaggcttcataatatatgctactacgttgcatttctaattgttatctga 860

                       
Query: 661 agattctatgaa 672
           ||||||||||||
Sbjct: 861 agattctatgaa 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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