Query= MSMg01no303_l12.b1 MSMg01no303_l12.b1 CHROMAT_FILE:
MSMg01no303_l12.b1 PHD_FILE: MSMg01no303_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:42 2005
(693 letters)
>mm_chr6_20905223_20906315
Length = 1093
Score = 277 bits (143), Expect = 3e-78
Identities = 146/147 (99%)
Strand = Plus / Plus
Query: 547 gtattgaacactctgatattgttttatattatcccctttaaatactaaatgcaagaaagg 606
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gtattgaacaatctgatattgttttatattatcccctttaaatactaaatgcaagaaagg 806
Query: 607 taatttaatgtaagctttgtatttagtacttaaatacatggttagtacagtattataatt 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 taatttaatgtaagctttgtatttagtacttaaatacatggttagtacagtattataatt 866
Query: 667 ctgttaatgtcttcattattatgcatg 693
|||||||||||||||||||||||||||
Sbjct: 867 ctgttaatgtcttcattattatgcatg 893
Score = 80.0 bits (41), Expect = 6e-19
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 5 gaattctgtcatttttcgattatttgttcagctactttcaatttgtatt 53
|||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 703 gaattctgccatttttggattatttgttcagctactttcaatttgtatt 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_l12.g1 MSMg01no303_l12.g1 CHROMAT_FILE:
MSMg01no303_l12.g1 PHD_FILE: MSMg01no303_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:42 2005
(665 letters)
>mm_chr6_21048540_21049603
Length = 1064
Score = 1261 bits (652), Expect = 0.0
Identities = 663/670 (98%), Gaps = 7/670 (1%)
Strand = Plus / Minus
Query: 1 tgaatgtcttagaaagaaaatctgtataaaaacaaaatggaaaaaaaacatgatcataaa 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 729 tgaatgtcttagaaagaaaatctgtataaaaacaaaatgg-aaaaaaacatgatcataaa 671
Query: 61 agcgtattaagtctatcacaaatacataaagataaggtttttgtttgtttgtttgtttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 agcgtattaagtctatcacaaatacataaagataaggtttttgtttgtttgtttgtttag 611
Query: 121 tgagtgataccttatcttttctctgttagcaccaaatccttgtagacttcttaatttcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgagtgataccttatcttttctctgttagcaccaaatccttgtagacttcttaatttcta 551
Query: 181 ttccccagattctgaaaatttcacttgttacatttcagataaaaattttaaaaagcattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttccccagattctgaaaatttcacttgttacatttcagataaaaattttaaaaagcattc 491
Query: 241 aagtgggaatagtgaagaattaacttataaagttaagtagagatgacattaaaggtcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aagtgggaatagtgaagaattaacttataaagttaagtagagatgacattaaaggtcagg 431
Query: 301 tcggcttattaaaataaaaccatataaacaataactaaaataaatgtaaagattaaagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcggcttattaaaataaaaccatataaacaataactaaaataaatgtaaagattaaagat 371
Query: 361 agatatttttataactttggctattatagatacatgaatgtgaatattaatggtgcttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agatatttttataactttggctattatagatacatgaatgtgaatattaatggtgcttgg 311
Query: 421 attggaagcctataatatgataaattacagaaatatgtatttttacatttttaaagaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 attggaagcctataatatgataaattacagaaatatgtatttttacatttttaaagaaaa 251
Query: 481 gttaaaactcaattgatgggaaattgtcatactgattaggcagcatggaa------acac 534
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 250 gttaaaactcaattgatgggaaattgtcatactgattaggcagcatggaaacacacacac 191
Query: 535 acacacacacacacacacactgctgagaagaataatttaggatggaagaaatgcaggcag 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 acacacacacacacacacactgctgagaagaataatttaggatggaagaaatgcaggcag 131
Query: 595 gatattgactgctcctcttggtgtcactaaacatgcacactggtctccatttttcacatt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gatattgactgctcctcttggtgtcactaaacatgcacactggtctccatttttcacatt 71
Query: 655 gtctttgttt 664
||||||||||
Sbjct: 70 gtctttgttt 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space: 690370
Effective search space used: 690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
