BAC Information

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BAC

Clone NameMSMg01-304A20
Chromosome6 (Build37)
Map Location 26,922,246 - 26,922,847
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304A20.T7 (MSMg01no304_a20.b1)MSMg01-304A20.TJ (MSMg01no304_a20.g1)
ACCAG429460AG429461
length1,3751,283
length of high quality
(start - end)		783 (46 - 828)604 (81 - 684)
definitionCHROMAT_FILE: MSMg01no304_a20.b1 PHD_FILE: MSMg01no304_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:10 2005CHROMAT_FILE: MSMg01no304_a20.g1 PHD_FILE: MSMg01no304_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCAATTANNNNNNNNCCAGTGGGCGCTAAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCCCCATCAAAATTCCAACCCATTTCTTTAACGAACTAGA
AAGGGCAATCTGCAAATTCACCTGGAATACCAAAAAACTTAGGATAGCAA
AAACTCTTCTCAAGGATAAAAGAATCTCCGGTGGAATCACCATGCTTGAC
CTAAAGCTGTACTACAGAGCAATTGTGATTAAAAACTGCATGGTACTGGT
ATAGTGACAGACAAGTAGACCATTGGAATAGAATTGAAGACCCAGAAATG
AACCCACATGCTTATGGTCACTTGATCTTTGACAAGGGAGGTAAAACCAT
CTAGTGGAAAAAGGACAGTATTTTCAACAAATGGTGCTAGCACAACTGGC
GATTATCATGTAGAAAAATGAGAATTGATCCATCCCTATCTCCTTGTACT
AAGGTCAAATCTAAGTGGATCAAGGAACTCCACATGAAACCAGAGACAGT
GAAAGTTATAGAGGAGAAAGTGGCGAAAAGCCTTGAAGATATGGGCACAC
AGTAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGA
ATAGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGA
CTCTGTCAATAAGATTAAAAGGCCACCAACAGATTGGGAAAGAATCTTTA
CCTATCCTAAATCAGATAGGGGACTAATATCCAATATATTTAAAGAACTC
AAGAAGGTGGACTCCAGAAAAACAAATAACCCCATTAAAAATGGGGCTCA
GAGTTAAACAAAGAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCA
CCTCGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATTCAAATCCCA
GCAACCCTGAGATTCACCTTACACCCAGTCGAAGGCTAAGAAAAAAATTC
TGGTGAAAGCAAATGCTTGGAAGGATGTGGAGAAAAAGAAAACCCTCCCT
TGTTGTGGGTTTGCAAGCTTGTTCAACCCTTTTGAAATAAACTGGCGGGT
CCTCCCAAAATGAACTAATACAATTGGGGGAATCTGGAAACTCCTTTGGA
ATAGGTCAAAAAATCCCCCCCCNAAAAAAACACCCTCCTTTTTTCATTCA
CTCTTTTTTATTCCCAAATTGGGAAAACCAAGACCTCCTCNAGAGTTCAC
AAAATTTGAGTTTCCCAGGGTTTATCCATCTAAAATAATATATATTCTTA
AATGTGATGTATGCTCCATTCGACAATCAAATAATACAAATTTATGGTAA
GTCATCACATATATCATTTCTTCTCAAATATCGTTTCAACACTGTAAATT
ATATATNAACATCCCATTACTTTCA

NNNCCTTTTTTATTNNNNATCATGGAGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAGCTCAAAGAATCTG
AGGTCTACTGGAGAATTCAGACCAACTCAAGATTGAAAACCTTTTGTTTT
ACAAATGATGTTGCAAAAAGCAAAACATTATTGAGAAATCAAAATCGATC
TCTGTGTTCATGTGTTCTACCTAACAATGCTCAGTGTGATATTAAGAAAT
TCAATAAGAAATTTGAAAGGTATACCAATAACTTAAAAGTAAATGCTTTG
TAAATCTAAACTTGCTCTATTAATATGTAATAAACTGGTAAACTTATTTA
TTAAATTAATTAATTAATTTAAAAATCACATAGTTTCACATGTAATCTAT
TTTAAATAAAGTATGTGAAATGAATGAATTATATTTTTTAGAATTTATTA
ATTCAGTGAATAAATAAAATTGCTTTTCATCTTTGTAAACCTTTTACTCT
TGGCTTGAACAGAAGAGCTGGATATTCATAGTTATTTCTGTATTTAATAT
TTTGTTATATATTTATTAGAAAAATATAGTATAGTAATGTCCTTCTCTAC
CAGTCTACAGGTTATTCATGTCACTCATCTTTGAGTTATACTGCAGCTAG
CAGGTCCTGGTGATTAACTAGGCTCTGCTTCAAAGAACTCTTGGGTCACA
GGCACATGGCACCACTCTATGATTTTACATGGGTGCTAGGAATTTCAACT
CCATGTTACACTGTTGTGAAAAGGGGCTTTTATCCATTAATCCATCTCTC
CCATGGCAAATTTCTCTGAAATTTGTTAGAAAAACTTACTTATAAAAAAA
TATTAAACNGTCCCATATTAAAATAATATTTATAACCCCCCNTATAAATT
CAAAACTTTTTTTTAATTCCCTTATAAAAAAGCGTTTATCTTTTGTAATT
TTATGGNAAACATTAAAAAATCATTTTTTCTTCTTANTACTTTAAAAATT
TAACTGGCCCGACAATATACCATTCACAAACACTAACCCGAAACATTTAT
CTAATTTCTCATAAACCAAACATATATCTCCTTCCAGTTCAACTCCCCTA
TCAACTAATACCCTTCTTTTCTATATCAATGTTTAATCTTTCAAAATCGT
TAACACTATTCCTTAAGACTATCTCTTCTATCNCNACCTTATCACTTCTC
TAACCTTTACATCTACTCTCTCCATTTCATTCCATATTTTNTACTTTATA
NCTACATCTCTACAATCACACTACTCCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_a20.g1 MSMg01no304_a20.g1 CHROMAT_FILE:
MSMg01no304_a20.g1 PHD_FILE: MSMg01no304_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:11 2005
         (604 letters)



>mm_chr6_26922045_26923048
          Length = 1004

 Score = 1091 bits (564), Expect = 0.0
 Identities = 594/604 (98%), Gaps = 3/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctaagctcaaagaatctgaggtctactggagaattcagaccaactcaagattgaaaacc 61
           ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
Sbjct: 202 tctaagctcaaagaatctgaggtctactggagatttcagatcaactcaagattgaaaatc 261

                                                                       
Query: 62  ttttgttttacaaatgatgttgcaaaaagcaaaacattattgagaaatcaaaatcgatct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttttgttttacaaatgatgttgcaaaaagcaaaacattattgagaaatcaaaatcgatct 321

                                                                       
Query: 122 ctgtgttcatgtgttctacctaacaatgctcagtgtgatattaagaaattcaataagaaa 181
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgtgttcatgtgttgtacctaacaatgctcagtgtgatattaagaaattcaataagaaa 381

                                                                       
Query: 182 tttgaaaggtataccaataacttaaaagtaaatgctttgtaaatctaaacttgctctatt 241
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttgaaaggtataccaatcacttaaaagtaaatgctttgtaaatctaaacttgctctatt 441

                                                                       
Query: 242 aatatgtaataaactggtaaacttatttattaaattaattaattaatttaaaaatcacat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatatgtaataaactggtaaacttatttattaaattaattaattaatttaaaaatcacat 501

                                                                       
Query: 302 agtttcacatgtaatctattttaaataaagtatgtgaaatgaatgaattatattttttag 361
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 502 agtttcacatgtaatctattttaaataaagtatgtgtaatgaatgaattatattttt-ag 560

                                                                       
Query: 362 aatttattaattcagtgaataaataaaattgcttttcatctttgtaaaccttttactctt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatttattaattcagtgaataaataaaattgcttttcatctttgtaaaccttttactctt 620

                                                                       
Query: 422 ggcttgaacagaagagctggatattcatagttatttctgtatttaatattttgttatata 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcttgaacagaagagctggatattcatagttatttctgtatttaatattttgttatata 680

                                                                       
Query: 482 tttattagaaaaatatagtatagtaatgtccttctctaccagtctacaggttattcatgt 541
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttattagaaaaatatagtgtagtaatgtccttctctaccagtctacaggttattcatgt 740

                                                                       
Query: 542 cactcatctttgagttatactgcagctagcaggtcctggtgattaa-ctaggctctgctt 600
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 741 cactcatctttgagttatactgcagctagcaggtcctggtgattaaac-aggctctgctt 799

               
Query: 601 caaa 604
           ||||
Sbjct: 800 caaa 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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