BAC Information

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BAC

Clone NameMSMg01-304B09
Chromosome6 (Build37)
Map Location 47,501,069 - 47,501,750
singlet/doubletsinglet
Overlap geneEzh2
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1
Downstream geneRn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304B09.T7 (MSMg01no304_b09.b1)MSMg01-304B09.TJ (MSMg01no304_b09.g1)
ACCAG429484AG429485
length1,3201,263
length of high quality
(start - end)		682 (89 - 770)561 (92 - 652)
definitionCHROMAT_FILE: MSMg01no304_b09.b1 PHD_FILE: MSMg01no304_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:15 2005CHROMAT_FILE: MSMg01no304_b09.g1 PHD_FILE: MSMg01no304_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCGTTTNNNNNNNCCAGTGGGCGCTAAGACTCACTAAGGGAGAGGAT
CCGCGGAATTCCACTTTAGTGGGATACGGTTAAATGCTCCTGTAATTTTA
GAGCTCAAGAAGTTGAGCCTTGAGAATCAAAAGGATCATGAAAATCAACA
GTTCAAGGCTAGCCTCAGCTACATACGGAGTATGAGACACTATTTCAAAA
AACACAAAACAAATTCCAGTTACCTGGAAATTTTACCAAGAAACCTCATT
TTCTAGAAATGCCAAAGGAAAAAAATTAGTTTTCATACTGACATTAAGGA
TATTTTATGTTTGCTTGTTTTGAAATATGAAGTACTTATAAAACAATTAT
TTGAAGGATCAAAATGAAACAAAAATATTTTAACACTAGGCAAGTAATTG
TTTGTATAAATGTCTTTTCACCAATTCATTAACTTAACAAAATTTGTTCA
TAAATATCTGTAATACTGCTCTGAGCTCCTTCACTGTAATAACTTCATCA
TAAAACAGCCTTGTAAAGAGTCACTGAGCTTCAAGTTAATGGGAAGCAGC
AAATGGAATAAAATGTGTACAAAAGATGTCAGAGGAATCCTCAGAGTGTA
AAAGTCTCAGTACAGGGATGTGACATATTTCTCAATCCTCACTCTAAGAT
TGGCCGGTACATTTTGGTTGTGGTAACTGACAGCAAGTTGCTTTACTACA
GATTTCAACAACAAAGATAGAAAATGAAAACGTACAATAACTGCACTTAC
GATGTAGGAAGCAGTCATACTTAAAACATCGTCGACAGAAGAGCGTATGA
AATGAATGCAAGCTTTGCTCCCTCTGAACAGATTTGGCATTTGGTCCATC
GATGTTTGGAGTACATTCCGGAGGCAGAACCCCTGGGAGCTGCTGCTCCG
TGAGTTCTTTATTTCTGACCTCCAACAATCAACCCAACATCTATTATTTA
TTCCCCCGAAAAACCCTTTTTTTGAAATTTTTCACAAGTTTTCCGAGGGT
TGATTTTCCTTTAACCTATTTTTTTAATAACTTTCGGAAATAATCCCCAC
CCTCCTATACTTTTCTTTCTCCTACAATCTCCTTCCTTTTTTTTTCTCTA
TAAATATCCTTTCTTTTTATTTGATCTAACTTGCTAAATTAACTACACTT
TTTTGTGTACAATAAATACCCCCTCACTCAAAAACACAAACAATACCTAT
ACCAATCTCCATTTACTCCTATATTCTCCTCTATATTTATTCCAATATAC
ATATCATATTACAGCTTTGTACTATCTACTTTATACAATATCATTCTTCA
CTGAAACATCTTTCCGCATG

NNCCCTGTGTTTNNNNNAAGATGTGAGCNTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTATTCTAACAGCATTGT
CTCAAAACCGTTCATCGCTCTGTTGCTCCGCAGGGCTGTGTCAGCCAGGA
GGGAAATTACACCAGGCTGCGGGCAGTGCCCAATCCCAGCAGGTCAGGGC
CACGAGGGATCAAGCAATGAGAGGCAGGAGAAGGCAGGCCCATCAGTAGC
AAGAAGCCATGCTGGCTGGGCCAAAGGTCCTGGTGCCCCGCTTCTCCAGG
ATACACCCAGCAGAGCGGAGCACATGGCTGGGCCGGTGGGCCGGTGGGCC
GGTGGGCCGGTGGGCCGGTGGGCCGGTGGGCCGGTGGGCCGGTGGGCCGG
TGGGCCGGTGGTTCGGTGGGCCGATTCCAGGAGGCTCACTTGCACACTGC
AGTTCTTCCTGCCAGGCTAACACGGGCAGTCCCAGTCCGCGTGGGCGTGG
GGTCCCGAGTGTGGGGAACTGTGTGGGTCCAAGTGGAGGGCCTGGCTCCT
GGCCCCGGAGACTTGGCTGTGGTCAGGGTGGTCTCGTGGCCCAAGGCCCA
GGCCTTCCAGAAAGGGAAGAAAGAAAAGCAGAGCTGTGGGTGTTGGAGAA
GCACCAGGTTGGAGCACGGGGGGCTCCCGCTGAGCCTCCCGGCTCGCTTG
AGGAGTGTAGAACTGTCCGCGAGGCCTGGATGTCCGGCAGGCCGCATGAG
GGCCGGTGTAAACCAAGGTTCATTCTACCGAACGTTTGTTTTTTGCGATC
TTTGCTGATCTTGCCGTGTCTCATTTTCCAACAGGGTTTGACCTCTGTCC
TCTTGCGCACTATCTTCAAGTCCCCAATAACAATTTTCTTCACCTTTCTC
TGTCCTTTACTCTTTCCTCATTCCACAATACCTACCATGCACACCTTCTA
TGGTATCACACTCACATCTTTACTCTTTTGCTTATCTCTCTTCATTCATT
CCCATTTCTATTCTTCTTTTCTCCCTCTTCTCTATTCTTTCATCTATTTT
CTCCTCTTTTTTTCCTGCATCTCCTTTTCTTTCTCTCTTCTTTTGCTACT
TTTTACCTTTCACTTCTTCCTCTACTCTCTACTTCATCATTTTATTTATT
CTTCGTTCTTCATTCTATATATTTCTTATTCAACTCATACTGATTTCCTT
ACTTAAATCTATACATATTACTATTTTTTACTTCTATCTATTCTATTACG
ACTAGTTATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_b09.b1 MSMg01no304_b09.b1 CHROMAT_FILE:
MSMg01no304_b09.b1 PHD_FILE: MSMg01no304_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:15 2005
         (682 letters)



>mm_chr6_47500869_47501950
          Length = 1082

 Score = 1249 bits (646), Expect = 0.0
 Identities = 673/682 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgtaattttagagctcaagaagttgagccttgagaatcaaaaggatcatgaaaatcaa 60
           ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 201 cctgtaattttagagctcaagaagttgaggcaggagaatcaaaaggatcatgaaaatcaa 260

                                                                       
Query: 61  cagttcaaggctagcctcagctacatacggagtatgagacactatttcaaaaaacacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttcaaggctagcctcagctacatacggagtatgagacactatttcaaaaaacacaaa 320

                                                                       
Query: 121 acaaattccagttacctggaaattttaccaagaaacctcattttctagaaatgccaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaattccagttacctggaaattttaccaagaaacctcattttctagaaatgccaaagg 380

                                                                       
Query: 181 aaaaaaattagttttcatactgacattaaggatattttatgtttgcttgttttgaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaattagttttcatactgacattaaggatattttatgtttgcttgttttgaaatat 440

                                                                       
Query: 241 gaagtacttataaaacaattatttgaaggatcaaaatgaaacaaaaatattttaacacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagtacttataaaacaattatttgaaggatcaaaatgaaacaaaaatattttaacacta 500

                                                                       
Query: 301 ggcaagtaattgtttgtataaatgtcttttcaccaattcattaacttaacaaaatttgtt 360
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaagtaattgtttgtgtaaatgccttttcaccaattcattaacttaacaaaatttgtt 560

                                                                       
Query: 361 cataaatatctgtaatactgctctgagctccttcactgtaataacttcatcataaaacag 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 cataaatatctgtaatactgctctgcgctccttcactgtaataacttcatcataaaacag 620

                                                                       
Query: 421 ccttgtaaagagtcactgagcttcaagttaatgggaagcagcaaatggaataaaatgtgt 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ccttgtaaagagtcactgagcttcaagttaatgggaagcagcgaatggaataaaatgtgt 680

                                                                       
Query: 481 acaaaagatgtcagaggaatcctcagagtgtaaaagtctcagtacagggatgtgacatat 540
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 681 acaaaagatgtcagaggaatcctcagaatgtaaaagtctcagtacagggacgtgacatat 740

                                                                       
Query: 541 ttctcaatcctcactctaagattggccggtacattttggttgtggtaactgacagcaagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttctcaatcctcactctaagattggccggtacattttggttgtggtaactgacagcaagt 800

                                                                       
Query: 601 tgctttactacagatttcaacaacaaagatagaaaatgaaaacgtacaataactgcactt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgctttactacagatttcaacaacaaagatagaaaatgaaaacgtacaataactgcactt 860

                                 
Query: 661 acgatgtaggaagcagtcatac 682
           ||||||||||||||||||||||
Sbjct: 861 acgatgtaggaagcagtcatac 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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