Query= MSMg01no304_c04.b1 MSMg01no304_c04.b1 CHROMAT_FILE:
MSMg01no304_c04.b1 PHD_FILE: MSMg01no304_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:22 2005
(783 letters)
>mm_chr6_116973959_116975143
Length = 1185
Score = 853 bits (441), Expect = 0.0
Identities = 454/459 (98%), Gaps = 2/459 (0%)
Strand = Plus / Minus
Query: 325 caaaaccatcttctaaacatgacaggtctgccctactcatgaacacatagcagctcttgt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 caaaaccatcttctaaacatgacaggtctgccctactcatgaacacatagcagctcttgt 1126
Query: 385 tgccaagacaggatcaaaccagccattattccaacttgggggatgagaggctcatgaggg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 tgccaagacaggatcaaaccagccattattccaacttgggggatgagaggctcatgaggg 1066
Query: 445 cagacctctatctgaagagctatggacagttgatgacttccagggaaggaagagttagtt 504
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1065 cagacctctatctgaagagctatggacagttgatggcttccagggaaggaagagttagtt 1006
Query: 505 ttctttaagtgtggcccctggtcctaataccacgagtatgtggtcagcacaaagtacatt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 ttctttaagtgtggcccctggtcctaataccacgagtatgtggtcagcacaaagtacatt 946
Query: 565 gttcccatgtgtgaaattgttagagaattaatagcaatatcataacttaaaaattcgtat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 945 gttcccatgtgtgaaattgttagagaattaatagcaatatcataacttaaaaatttgtat 886
Query: 625 cacaaaccctggatcaaccactaggaaaagttaagagaaagaagtgcagttgatgtgctg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 cacaaaccctggatcaaccactaggaaaagttaagagaaagaagtgcagttgatgtgctg 826
Query: 685 agggaagagagggaacgaagtccaaccacccctgaagactgtaggaggc--agagagtgg 742
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 825 agggaagagagggaacgaagtccaaccacccctgaagactgtaggaggcagagagagtgg 766
Query: 743 aaggagataacaggagacaggagaaacaaggaaatcctg 781
||||||||||||||||||||||| |||||||||||||||
Sbjct: 765 aaggagataacaggagacaggaggaacaaggaaatcctg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 783
Length of database: 1185
Length adjustment: 10
Effective length of query: 773
Effective length of database: 1175
Effective search space: 908275
Effective search space used: 908275
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_c04.g1 MSMg01no304_c04.g1 CHROMAT_FILE:
MSMg01no304_c04.g1 PHD_FILE: MSMg01no304_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:22 2005
(643 letters)
>mm_chr6_116788307_116789351
Length = 1045
Score = 1110 bits (574), Expect = 0.0
Identities = 628/648 (96%), Gaps = 7/648 (1%)
Strand = Plus / Plus
Query: 1 tgcctccc--gcatgctgggattaaaggcgagcgccaccacaatgtttttgctatttgtt 58
|||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 200 tgcctccctag--tgctgggattaaaggcgagcgccaccacgatgtttttgctatttgtt 257
Query: 59 tttttt-cttctgagatgctgttcttttatttgcttttaagtactttcacaattgcttac 117
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttttttcttctgagatgctgttcttttatttgcttttaagtactttcacaattgcttac 317
Query: 118 tggaggatttttatgttggctaagagataactctacatcttgatataaaggcagcagaag 177
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 318 tggaggatttttatgttggctaagagataactctacatcttgatccaaaggcagcagaag 377
Query: 178 gaaacggggacacattggggcatagcttgagcatttgagaccttaaagccctcacagtga 237
|| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 378 gagacggggccacattggggcgtagcttgagcatttgagaccttaaaattctcacagtga 437
Query: 238 cacacttcctctgccaaggccacacctactccaacaaggccatatctcttaatagtgcca 297
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 438 cacacttcctctgccaaggccacacctactccaacaaggccatatctcctaataatgcca 497
Query: 298 cattctatggacctatggatacggggaagaaccagtgcagtgtgtccagggtgtctcaga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cattctatggacctatggatacggggaagaaccagtgcagtgtgtccagggtgtctcaga 557
Query: 358 gagaagcgagtgcctgacatggacggggtcagacctatctttccaacacccacgatctct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gagaagcgagtgcctgacatggacggggtcagacctatctttccaacacccacgatctct 617
Query: 418 tctcattttttgactgtcttttttttttatt--attcacattgaagtcctcttagtctga 475
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 618 tctcattttttgactgtctttttttttttttttattcacattgaagtcctcttagtctga 677
Query: 476 atgtgttttttgatccccaggcacctaggatactgactggaagctctgggttctgaccta 535
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 678 atgtgttttttgatccccaggcacctaggatactgtctggaagctctgggttctgaccta 737
Query: 536 attttgccttttagccggtatcttcagacagcattccatcctcacctggacagatgtttg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 attttgccttttagccggtatcttcagacagcattccatcctcacctggacagatgtttg 797
Query: 596 cttactactgtgcagcgatgtgcccgctgacactttggagaatctggg 643
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cttactactgtgcagcgatgtgcccgctgacactttggagaatctggg 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1045
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1035
Effective search space: 655155
Effective search space used: 655155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
