Query= MSMg01no304_f04.b1 MSMg01no304_f04.b1 CHROMAT_FILE:
MSMg01no304_f04.b1 PHD_FILE: MSMg01no304_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:48 2005
(782 letters)
>mm_chr6_91116127_91117311
Length = 1185
Score = 1471 bits (761), Expect = 0.0
Identities = 778/785 (99%), Gaps = 3/785 (0%)
Strand = Plus / Minus
Query: 1 atataacaagaaaacagttagcagcaccattagtgaaatccaggcttcattaggacctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 atataacaagaaaacagttagcagcaccattagtgaaatccaggcttcattaggacctag 926
Query: 61 aggctcagttaaccaggccctagtttccatgataggagtatcactgaggtcctccatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aggctcagttaaccaggccctagtttccatgataggagtatcactgaggtcctccatgaa 866
Query: 121 ccgggaactatgctacagacacacatggcataaactacccatgtccctatataactgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ccgggaactatgctacagacacacatggcataaactacccatgtccctatataactgggt 806
Query: 181 attctaacatcatggctatgccaggtctaattgggtacctggcaatgcaagcaggaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attctaacatcatggctatgccaggtctaattgggtacctggcaatgcaagcaggaagag 746
Query: 241 tcatggcccctggccatgtggagctcacaaaaagggatcctctagggtcctgcacaagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcatggcccctggccatgtggagctcacaaaaagggatcctctagggtcctgcacaagcc 686
Query: 301 agcagcttcttcataagacaactatgcaacagcaaaggaaaggctgctaggaaaaaggtt 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agcagcttcttcataacacaactatgcaacagcaaaggaaaggctgctaggaaaaaggtt 626
Query: 361 cttcaactgtcaaggactgtgaagacagactgtagagaccacacagaaccagaaagcact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcaactgtcaaggactgtgaagacagactgtagagaccacacagaaccagaaagcact 566
Query: 421 ggcccccagaacccctgttgtggcacttagcctggacctatcccctcgtc---ccatgac 477
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 565 ggcccccagaacccctgttgtggcacttagcctgggcctatcccctcgtcgtcccatgac 506
Query: 478 caagccctgtccactgacctagtccccagaaagatggaccctttcaggagaggcacgtgg 537
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caagccctgtccactggcctagtccccagaaagatggaccctttcaggagaggcacgtgg 446
Query: 538 aggcaactaattccacacagacatgcccaggaacctacctgagggacggcacaggctctc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggcaactaattccacacagacatgcccaggaacctacctgagggacggcacaggctctc 386
Query: 598 tgggtggaagagaactccctgccattggaaatatgtaaatgttgggcagggacattctca 657
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggtggaagagaactccctgtcattggaaatatgtaaatgttgggcagggacattctca 326
Query: 658 caacaaatatctcacagcagatagaggtacccgtggggcctacacaggaacaaaaaggct 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacaaatatctcacagcagatagaggtacccgtggggcctacacaggaacaaaaaggct 266
Query: 718 gtatactactccaggctactcggctggctctgagggctttcctgtccctctgtccccaca 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtatactactccaggctactcggctggctctgagggctttcctgtccctctgtccccaca 206
Query: 778 ccctt 782
|||||
Sbjct: 205 ccctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 782
Length of database: 1185
Length adjustment: 10
Effective length of query: 772
Effective length of database: 1175
Effective search space: 907100
Effective search space used: 907100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_f04.g1 MSMg01no304_f04.g1 CHROMAT_FILE:
MSMg01no304_f04.g1 PHD_FILE: MSMg01no304_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:49 2005
(804 letters)
>mm_chr6_91064574_91065777
Length = 1204
Score = 1531 bits (792), Expect = 0.0
Identities = 801/804 (99%)
Strand = Plus / Plus
Query: 1 gcaacacccccagggcctggcaggggttcatttgtctttgtttttcatctcagagacttg 60
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 201 gcaacacccccagggcctggcaggggttaaattgtctttgtttttcatctcagagacttg 260
Query: 61 aagtactcctggataaagaggccatctcctccagggagagacgactgcaggtgtgagtct 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aagtactcctggataaagaggccatctcctccagggagagatgactgcaggtgtgagtct 320
Query: 121 tagctatctgccaactctcaaagcctccaggattctcaaaactaaagcaacgagtgactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagctatctgccaactctcaaagcctccaggattctcaaaactaaagcaacgagtgactg 380
Query: 181 tattcagaataacatttctgatctatgcttgactgacagaccagcttccggttgagtaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcagaataacatttctgatctatgcttgactgacagaccagcttccggttgagtaag 440
Query: 241 ggggaaactgcaaccaaacaccttcaaagaagacacttttcaaccacaccttaggatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggaaactgcaaccaaacaccttcaaagaagacacttttcaaccacaccttaggatgaa 500
Query: 301 agccaccagacactaaacaatccagagggtacttggcatgcgtctgaggtatctgagctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccaccagacactaaacaatccagagggtacttggcatgcgtctgaggtatctgagctt 560
Query: 361 ttgaatgtctttcccagtcctcctactgagaatataaaaatctgccaagacccatcagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaatgtctttcccagtcctcctactgagaatataaaaatctgccaagacccatcagca 620
Query: 421 actctcaggaaagtgcagttagagaggaagtaaagacagaaaatgttattctaggaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actctcaggaaagtgcagttagagaggaagtaaagacagaaaatgttattctaggaagaa 680
Query: 481 acatacagaacttcctaggaagcagcacacaaatacacgccaggagattgattcccttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatacagaacttcctaggaagcagcacacaaatacacgccaggagattgattcccttgg 740
Query: 541 agccagctgttttaaatagtcagcttcctctctctggcccatctatcaagcagacaactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agccagctgttttaaatagtcagcttcctctctctggcccatctatcaagcagacaactt 800
Query: 601 caacaatggagtgagcatgtatccctccagagtattaacagctgacctcctcactcaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caacaatggagtgagcatgtatccctccagagtattaacagctgacctcctcactcaaaa 860
Query: 661 caaagccccagagaagaataaacacttccccttgggtaaagcatttactccaaactgcaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 caaagccccagagaagaataaacacttccccttgggtaaagcatttactccaaactgcaa 920
Query: 721 tggaaagactctgcctcttcatactccagaggccaacctaaagacactccagactgacct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tggaaagactctgcctcttcatactccagaggccaacctaaagacactccagactgacct 980
Query: 781 caaagcggcactactgcctcagcc 804
||||||||||||||||||||||||
Sbjct: 981 caaagcggcactactgcctcagcc 1004
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 804
Length of database: 1204
Length adjustment: 10
Effective length of query: 794
Effective length of database: 1194
Effective search space: 948036
Effective search space used: 948036
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
