Query= MSMg01no304_f08.b1 MSMg01no304_f08.b1 CHROMAT_FILE:
MSMg01no304_f08.b1 PHD_FILE: MSMg01no304_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:50 2005
(708 letters)
>mm_chr6_115305906_115307023
Length = 1118
Score = 1091 bits (564), Expect = 0.0
Identities = 665/716 (92%), Gaps = 33/716 (4%)
Strand = Plus / Minus
Query: 1 tgatttttttccccattgaagttcataacatattaacttttgtctaaagagtggcacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgatttttttccccattgaagttcataacatattaacttttgtctaaagagtggcacttt 654
Query: 61 gtccgcaggcccacacttgcacactgtgtttactatattgggaagggtccaggttgagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtccgcaggcccacacttgcacactgtgtttactatattgggaagggtccaggttgagta 594
Query: 121 gtggcagttgatatccatttactttgattatatttaaatgggacagtccctaagaattta 180
|||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 gtggtagttgatctccatttactttgactatatttaaatgggacagtccctaagaattta 534
Query: 181 aaaataatgttacattactttatgc-ggggggggg----ggttaaaaataacaaattatt 235
||||||||||||||||||||| | | ||||||||| ||||||||||||||||||| |
Sbjct: 533 aaaataatgttacattactttttactgggggggggtagtggttaaaaataacaaattact 474
Query: 236 tttctctcttttccaggggtcctgtaaaatggctctggcattagatataatattccacaa 295
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 473 tttctctcttttccaggggtcctgtaaaatggctctggcattagagagaatattccacaa 414
Query: 296 tgtggaaggtgagcacaggcatccttccagagaggactgctctgctctttacagctgctg 355
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 413 tgtggaaggtgagcacaggcatccttccagagaggactgctctgctctttagagctgctg 354
Query: 356 gccacaacattgccttttatctctatctcagacaaccctgaccaatctccagc------c 409
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 353 gccacaacattgccttttatctctatctcagacaaccctgaccaatctccagccagtatc 294
Query: 410 agtatcagttccagagagacttagaagatcttcattcaaaatgaaacatcaaaaccagct 469
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 293 agtatcagttccagagagacttagaagatcttcattcaaaatg-aacatcaaaaccagct 235
Query: 470 taacgggataaacaagttattcat------------------tctctctctcaatatata 511
|||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 234 taacgggataaacaagttattcattctctctctctctctctctctctctctc--tatata 177
Query: 512 tatgtatatatacacatacacacacacacacacacatttccacaaacacatctaccattt 571
||| |||||||| | ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 176 tatatatatatatatatacaaacacacacacactcacttccacaaacacatctaccattt 117
Query: 572 gaataattctcaacatgttcccacatatgaggtttagttgtg-tttttttgttttttgtt 630
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 116 gaataattctcaacatgttcccacatatgaggtttggttgtgttttttttgttttttgtt 57
Query: 631 tttaaatgtatctatgaattgcacttcccaatttgacattgacacccagcctccca 686
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 56 tttaaatttatctatgaattgtacttcccaatttgacattgacacccagcctccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1118
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1108
Effective search space: 773384
Effective search space used: 773384
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_f08.g1 MSMg01no304_f08.g1 CHROMAT_FILE:
MSMg01no304_f08.g1 PHD_FILE: MSMg01no304_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:50 2005
(708 letters)
>mm_chr6_115140830_115141937
Length = 1108
Score = 1334 bits (690), Expect = 0.0
Identities = 702/706 (99%)
Strand = Plus / Plus
Query: 3 aaataaataaatactaagatgacagttagaagaggcacatggacaaggtatagagaaaac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaataaataaatactaagatgacagttagaagaggcacatggacaaggtatagagaaaac 262
Query: 63 ctcctgcaaactttccccaaagcaagttaagatatgagcttgaaatgttatgtaccagga 122
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcgtgcaaactttccccaaagcaagttaagatatgagcttgaaatgttatgtaccagga 322
Query: 123 aagctcgttagagactgagtgtgctaaggtttgtgctgtgtctggtcacgtagacatctt 182
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 323 aagctcgttagagactgagtgtgctaaggtttgtgctgtgtctggtcatgtagacatctt 382
Query: 183 ctgtctcgtgtacagcagcatttcagaccctcagaaagtaaagcacgtgttcggaatatg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgtctcgtgtacagcagcatttcagaccctcagaaagtaaagcacgtgttcggaatatg 442
Query: 243 ctgtgttatataaacatctcctggtaagccactccgctgagctctgggaatgactttgac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgtgttatataaacatctcctggtaagccactccgctgagctctgggaatgactttgac 502
Query: 303 cctcatgaaacctaagtcagcactcgctggctaaggccggtcttctaagagttagcagcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctcatgaaacctaagtcagcactcgctggctaaggccggtcttctaagagttagcagcc 562
Query: 363 tcatgcctgctaatgcttttttgcaaagtgtgctattatcatgacctttctgaaatgcta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcatgcctgctaatgcttttttgcaaagtgtgctattatcatgacctttctgaaatgcta 622
Query: 423 tcagaagctgagattggttgatttaggaaataaatagtgccttcttactaaaaggtattt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcagaagctgagattggttgatttaggaaataaatagtgccttcttactaaaaggtattt 682
Query: 483 aaaatacaggtagttcaaaacctgtatgagaaatttaaaatcacttggaacatccatcgc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaaatacaggtagttcaaaacctgtatgagaaatttaaaatcacttggaacatccatcgc 742
Query: 543 tgttgtctgaccttgtgacattcatagtctcatgaagcattatttatatgttatataaca 602
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 743 tgttgtctgaccttgtgacattcatagtctcatgaagtattatttatatgttatataaca 802
Query: 603 tttcattgtttttctcacgtgctagtcctttattatacaggagaaagtaactgggttaca 662
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tttcattgtttttctcacatgctagtcctttattatacaggagaaagtaactgggttaca 862
Query: 663 agtcagaatgagatttgagtgggtgctgccgctcttcactgctctc 708
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 agtcagaatgagatttgagtgggtgctgccgctcttcactgctctc 908
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
