Query= MSMg01no304_h01.b1 MSMg01no304_h01.b1 CHROMAT_FILE:
MSMg01no304_h01.b1 PHD_FILE: MSMg01no304_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:05 2005
(708 letters)
>mm_chr6_90459323_90460430
Length = 1108
Score = 1309 bits (677), Expect = 0.0
Identities = 700/713 (98%), Gaps = 10/713 (1%)
Strand = Plus / Plus
Query: 1 ttgcagctttattgtggtattacagcaactttaaaacttcctattttatacacaaatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcagctttattgtggtattacagcaactttaaaacttcctattttatacacaaatcct 260
Query: 61 gatttccatctttttacttcctgcctgttctagagtttgaacctcggggttttctgtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttccatctttttacttcctgcctgttctagagtttgaacctcggggttttctgtgca 320
Query: 121 ttaaatttgtcttctccctctgagctgcatctccagccccctctcttttcctttagaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaatttgtcttctccctctgagctgcatctccagccccctctcttttcctttagaagt 380
Query: 181 gggctggtacctgcgttcacaccttctaactcttcagaggtttatatggctgagcctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggctggtacctgcgttcacaccttctaactcttcagaggtttatatggctgagcctctt 440
Query: 241 tctcacaagctctcccattggctttgcc-----cctttttcttcccagcctcatcaggat 295
||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 441 tctcacaagctctcccattggctctgccccacacc-----cttcccagcctcatcaggat 495
Query: 296 gatacagcctttcctgtgggacgttagaagtccttgccggaggaaagccattgattccct 355
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 496 gatacagtctttcctgtgggacattagaagtccttgccggaggaaagccattgattccct 555
Query: 356 ccgggagcctaccctacctgcaccaactactcttggacacagaacttcatgtgtgcttga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ccgggagcctaccctacctgcaccaactactcttggacacagaacttcatgtgtgcttga 615
Query: 416 aatagaatgaaagggaagcagattgagtggaaagaaacctcctgggttcctcttaaatga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aatagaatgaaagggaagcagattgagtggaaagaaacctcctgggttcctcttaaatga 675
Query: 476 gatggattgcccagtaggcttcaaagttacaatggaagaaggctcacagcctcacattcc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gatggattgcccagtaggcttcaaagttacaatggaagaaggctcacagcctcacattcc 735
Query: 536 cacagagcacagaatccccaccctccacaggacttagacaccatcctgagtcacctgtgc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cacagagcacagaatccccaccctccacaggacttagacaccatcctgagtcacctgtgc 795
Query: 596 ctcccattaacaggactatcatctttgtctcttctagtggacatccagttgctggcttag 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ctcccattaacaggactatcatctttgtctcttctagtggacatccagttgctggcttag 855
Query: 656 gtgcagctccctgttggaccctggcacacttccttcagccctctatccttggg 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gtgcagctccctgttggaccctggcacacttccttcagccctctatccttggg 908
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_h01.g1 MSMg01no304_h01.g1 CHROMAT_FILE:
MSMg01no304_h01.g1 PHD_FILE: MSMg01no304_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:05 2005
(670 letters)
>mm_chr6_90616695_90617766
Length = 1072
Score = 1257 bits (650), Expect = 0.0
Identities = 666/672 (99%), Gaps = 2/672 (0%)
Strand = Plus / Minus
Query: 1 gtgtggggataaccgtggtagaagctgttcaccatcagtgatgttgccttgtttctgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gtgtggggataaccgtggtagaagctgttcaccatcagtgatgttgccttgtttctgtgg 668
Query: 61 tttaatttggtgccagccacttaaccccagaaagtgggagccctcacgcctcctaggttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tttaatttggtgccagccacttaaccccagaaagtgggagccctcacgcctcctaggttt 608
Query: 121 cttataggtagagagtactatgaggctagggaagctgctttcagtgtctcctccagcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttataggtagagagtactatgaggctagggaagctgctttcagtgtctcctccagcctt 548
Query: 181 ggagaggaaacactcgctgtcagagcagcagccccttaactaccaccagtgtccatccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ggagaggaaacactcgctgtcagagcagcagccccttaactaccaccagtgtccatccag 488
Query: 241 tcagtgtgcacggaacagtgtgacctgggcttattgtgtttccctccgagcctgtccagc 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 487 tcagtgtgcacggaacagtgtgacctgggcttattgtggggccctccgagcctgtccagc 428
Query: 301 actccctgcctgccctcccaccacagctctgcctcatactgctttctcatttctcaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actccctgcctgccctcccaccacagctctgcctcatactgctttctcatttctcaggaa 368
Query: 361 ttgttttctccttttttgagttttctttgcttttgtca--ttttttttttcatagtgaga 418
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 367 ttgttttctccttttttgagttttctttgcttttgtcattttttttttttcatagtgaga 308
Query: 419 atctgacactcaccaccagcatgagggtttaagcaagggcttctcaacctggacactgga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atctgacactcaccaccagcatgagggtttaagcaagggcttctcaacctggacactgga 248
Query: 479 gacactctggggcagataactgcctgtcattgcactgtgcctgggttcactgaggccagc 538
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gatactctggggcagataactgcctgtcattgcactgtgcctgggttcactgaggccagc 188
Query: 539 agcacttgcccagttgtgacaacctgttgcatctccagaaatgccaggtgtcatatgact 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agcacttgcccagttgtgacaacctgttgcatctccagaaatgccaggtgtcatatgact 128
Query: 599 cctggttgagaaccactagcttcccagcggcctgttcaacccagccatgtcactcgactg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cctggttgagaaccactagcttcccagcggcctgttcaacccagccatgtcactcgactg 68
Query: 659 cttgggccctgg 670
||||||||||||
Sbjct: 67 cttgggccctgg 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1072
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1062
Effective search space: 700920
Effective search space used: 700920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
