BAC Information

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BAC

Clone NameMSMg01-305B10
Chromosome6 (Build37)
Map Location 145,823,675 - 145,823,976
singlet/doubletsinglet
Overlap genenone
Upstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3
Downstream geneSspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305B10.T7 (MSMg01no305_b10.b1)MSMg01-305B10.TJ (MSMg01no305_b10.g1)
ACCAG430171AG430172
length1,2971,254
length of high quality
(start - end)
305 (480 - 784)734 (125 - 858)
definitionCHROMAT_FILE: MSMg01no305_b10.b1 PHD_FILE: MSMg01no305_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:35 2005CHROMAT_FILE: MSMg01no305_b10.g1 PHD_FILE: MSMg01no305_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGGCCCTNNNNNNNGGCATTCGCGCATCGACTCCTAAGGGAGAGGATC
CGCGGAATTCCCAGGAATGCAGCTGACTGTCAAGGCTCCCCAAGAACTAN
AGNNACAGACTGGGGCCCGTGAACACGAGAGNGCTAGGAANCAGACCTGG
AACCTCTACAAGCCAATACTCTTAACTCCTGAGCAACCTTTCTAGTCCCA
AGACTATATAGCTTTTCCACCAAGCTGCTGGTGGTCATTTTTAACCCTTT
CTCCCACTTCCTGTCTCATGTTGGCAACAATGTCACAGATACTCATTGAC
CCTATTTTCTCTGTGTGTGCATGATCCATTTTCCAGACCAAGCAGGACCG
CATTACCTCAGCGATGCGATCTTTGCCACTGATTCTAACTCTTGGGGCGT
CATGAATTTTTCAGGNANCCCAAACAGGAGGGAANNAGNAGAAAGCCCGG
AAGGCAGCGCTGTTATCTACCCCCCCGCCGGGGCTCGTGAAGGGGTGAGC
AAAAGCAGACTCTCAAGGACCTGGGGTTGGAGGCGGGGAGCTGAGAGCTT
CCGAGCCCACTGCTGGGAGCTTCCGAGCCCACTGCTGGATGTGTGTGCAC
GAAGACACTATGAATCTTACTCGTGGACACATCTGCCACGGGGGAAAGAT
GGCCACCCTTTCCATTTGCCTCATCTCCTAATGGGTCCCTCGTTGACAGA
GTCTGAGCTGTGCCCTGTCACTGTGGTTCCAGGCTTCTCTCCTGAGATGA
GGGCAGTGGAGCTGGTGGAGTGGACAATGAACTCCTTGTATTCCACCCCC
CACCCCCCCCACACACCGATCTTGTCTTGCCCCCACACCAATCCTACTCA
CTGGATTTTAGCCAGAAAAACCATTTTCAGTACACTTGGTTCTCTTAATC
AAAATTCTAACAGATTCCCATTTCCACCAAGTCCAAAATAAAACAGACAC
TTGCTCTCCAGGGGCCCGAAGGACACTGTAGCGGCCTCTGCCTCTTTCGN
CCCACCTCTCTCATCTCCCCCCGAACCCCAAAGGGGGACCCTTTTTGCTC
CTTTTCTTAAGGGATCCCCCCTTTCTTTTTCGGGCCTTCCAAGCTTTTCA
GGTTCTGAATTCCCGGCCAAAAACCTCCCCTAAACTTTAGGGGGGTCTGA
AGGGGGTTTTCAAAAAATTTTCTGGGTTGGATCACAACCCTTCAAAAAAT
CCCTGCACGCTCTGTTGAAAAAAAAACCACGGGGAATCTCCTTTTGGGTG
GAAGGGGGGATTGATAGGTTAATTAACAATGATCTGATCATGTATCG
NCCGTCCTTTNNNNACCGAAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATGGACTGAAGTTAAGGAT
GGTTGTGCGTTACGGATCTTCCTGGGGTTAATTGTATTTGATGTTAATTC
TATTCTCCTGTGAGGGGCTGCGAACAAGGAATGAGTTAGCACTCAAGTGA
TTTCCTGTAAACCTTCTTCCTACCTTAATTTATAAAGGCTAGACCCAGTG
ATTGGGCAGAGAAAGAGAGGAAGGTGGAGCTGAAGGTTTTGGGAGAGAAG
GAGAGAGAGGACGACTGAGGAGGAGGAAGGAGAGTGGAGCATAAGCACCT
GGCCTGGAGAAACTGCAAGTTATAAGGGGTCTCTTATATAGGGAAGGTGG
CAGTGTAGTGTTAGATCAGCTCAATCTAGGTACACATCACATATTGTTAT
TAATTAAGTTGTATTTTCATTGCTCAGACTTATTGGGTTGGAAATTTACT
ACAACAGTTATGAGCCATAGTGCTAGGAACTGAACACAGTTCAATTCAGC
TGCACTGTTCTCTGTTTTCTATTCTCTGTGCTTATTTCTGTTTTAATGTT
TGCTATTTCTTTCTATCTGCTAATTCTGAGCTTCATTGCTTTCCCCTCTA
GGTTCTCAGAGTTGTACCAATAGGTGATTTAATATCAAGAATCTATCAAC
TGCTTTCCAAAATTGTTGTACCATTTTGACCTTCTACAGAGAGAGGGACA
TTTGCTTCACAATCTTGCCAATAGCAGGGACACCTGGGCCCTTCACCTGT
CACTGTTCTAGCGTGTAGGAGGCATGGCTGTGGCTGTAGCTCCCATTTTC
CTTTTGAACAGCAAGGTTTAATATCTTANAGGCCATGCACAGTACCTTTT
GTGTAAGCAGCTTTGCTTTTATTTGTGGCTTTTGACTCTTTGTTGAATTT
TTATTTTTTTTCCCACTCCTGGAAAAAAAGGCTTTTTTAAAAAGGGGGAA
AATTTATTTGGGTTTCAAGGTGCCCAAAAGAAAATTGCCCCTGATTTTTT
TTCCTTTAAAAAAAAAGGATTTTTTTTTATTAAAAAAAATTTAAAAATTT
TTCTTTTTGAGTAAAAAAAAAAATTTGTTTTGGGAAAGGGACAAAGCCTC
CTTTTTTGTTTATCAAAAAAAATTTAATATTTGTTGGTGCCTCTCCTTTC
TTAATAAGAGGTAAAAAAGAAATCTTCTCTCCCCTNTGTGTGTTGATTTT
TTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_b10.b1 MSMg01no305_b10.b1 CHROMAT_FILE:
MSMg01no305_b10.b1 PHD_FILE: MSMg01no305_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:35 2005
         (305 letters)



>mm_chr6_145823472_145824176
          Length = 705

 Score =  385 bits (199), Expect = e-111
 Identities = 276/325 (84%), Gaps = 43/325 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggggctcgtgaaggggtgagcaaaagcagactctcaaggacctggggttggaggcgggga 60
           |||||||||||||||||||||||| |||||||||| |||| ||||||||||||||    |
Sbjct: 204 ggggctcgtgaaggggtgagcaaatgcagactctc-aggaactggggttggaggc----a 258

                                                                       
Query: 61  gctgagagcttccgagcccactgctgggagcttccgagcccactgctggatgtgtgtgca 120
              |||||||   |||     || |      |||||||||||||||||||||||||||||
Sbjct: 259 ---gagagct---gag-----tg-t------ttccgagcccactgctggatgtgtgtgca 300

                                                                       
Query: 121 --------------------cgaagacactatgaatcttactcgtggacacatctgccac 160
                               ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 301 gtgatgcacaggaacttattcgaagacactatgaatcttacgcgtggacacatctgccac 360

                                                                       
Query: 161 gggggaaagatggccaccctttccatttgcctcatctcctaatgggtccctcgttgacag 220
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagggaaagatggccaccccttccatttgcctcatctcctaatgggtccctcgttgacag 420

                                                                       
Query: 221 agtctgagctgtgccctgtcactgtggttccaggcttctctcctgagatgagggcagtgg 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agtctgagctgtgccctgtcactgtggttccaggcttctctcctgagatgagggcagtgg 480

                                    
Query: 281 agctggtggagtggacaatgaactc 305
           |||||||||||||||||||||||||
Sbjct: 481 agctggtggagtggacaatgaactc 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)