Query= MSMg01no305_b13.b1 MSMg01no305_b13.b1 CHROMAT_FILE:
MSMg01no305_b13.b1 PHD_FILE: MSMg01no305_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:36 2005
(227 letters)
>mm_chr6_113202456_113203082
Length = 627
Score = 379 bits (196), Expect = e-110
Identities = 214/220 (97%), Gaps = 4/220 (1%)
Strand = Plus / Plus
Query: 1 tcaaagtgattcctgccatgaggaaaaatgaaaataataaggaaggtgggggcttagttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcaaagtgattcctgccatgaggaaaaatgaaaataataaggaaggtgggggtttagttt 260
Query: 61 agttgtagagcactgtcctggcaggcttccgtctcctacagaccctgtttaaagaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgtagagcactgtcctggcaggcttccgtctcctacagaccctgtttaaagaaagaa 320
Query: 121 aaaagccagccaagtaatagctactatttttccttgaaaattatgggttttatttatctt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaggcagccaagtaatagctactatttttccttgaaaattatgggttttatttatctt 380
Query: 181 ttggtttttgggtttgt-ttttttt-ttt-ttt-tttttt 216
||||||||||||||||| ||||||| ||| ||| ||||||
Sbjct: 381 ttggtttttgggtttgtgtttttttgtttgtttgtttttt 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space: 134724
Effective search space used: 134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no305_b13.g1 MSMg01no305_b13.g1 CHROMAT_FILE:
MSMg01no305_b13.g1 PHD_FILE: MSMg01no305_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:36 2005
(330 letters)
>mm_chr6_113361208_113361937
Length = 730
Score = 582 bits (301), Expect = e-171
Identities = 327/345 (94%), Gaps = 15/345 (4%)
Strand = Plus / Minus
Query: 1 agtccccaagacccatgaagtacaaggggagaaccgactctcacaggttgtcctctgacc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 728 agtccccaagacccatgaagtagaaggggagaaccgactctcacaggttgtcctctgacc 669
Query: 61 tccagacctccacttgtgtgtcatggcatgtgcaaacacacacatatacaaactcaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tccagacctccacttgtgtgtcatggcatgtgcaaacacacacatatacaaactcaaaca 609
Query: 121 cactaagtaatataataataataataataataataataataataataataa--------- 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cactaagtaatataataataataataataataataataataataataataataataataa 549
Query: 172 ------taataataataaaaggatgacagccaccttagcccaaggtcaaatttggcatca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 taatactaataataataaaaggatgacagccaccttagcccaaggtcaaatttggcatca 489
Query: 226 ggaattaggagagagtctgccaggtatgccttgtgacagtccaatgaggtgtccagcatc 285
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 488 ggaattaggagagagtctgccaggtgtgccttgtgacagtccaatgaggtgtccagcatc 429
Query: 286 accatcacttaagtgggagaagggggctttggggttttgccaaaa 330
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atcatcacttaagtgggagaagggggctttggggttttgccaaaa 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 18
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
