BAC Information

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BAC

Clone NameMSMg01-305D07
Chromosome6 (Build37)
Map Location 141,463,136 - 141,463,546
singlet/doubletsinglet
Overlap genenone
Upstream genePlekha5, Aebp2, EG664868, LOC664875, Pde3a
Downstream geneSlco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305D07.T7 (MSMg01no305_d07.b1)MSMg01-305D07.TJ (MSMg01no305_d07.g1)
ACCAG430253AG430254
length1,3231,328
length of high quality
(start - end)
421 (45 - 465)387 (75 - 461)
definitionCHROMAT_FILE: MSMg01no305_d07.b1 PHD_FILE: MSMg01no305_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:50 2005CHROMAT_FILE: MSMg01no305_d07.g1 PHD_FILE: MSMg01no305_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCACTCATTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGTGGAGGTTTCCACATTGAATAGTGAATATAATGAGACATTCG
AGCCACAGAAGACAAACAAGGTTCTAAAGAACTTGACCCTGTAGGAATGA
GGATTTTGGATCATGCTATCTCTAAAAGCTTTCAACCAAGGGAAGTACTG
AAAAAGAAACATGGAAAATGGATTTTTCCCTGCTGATGTGGATGCTGGGA
ACCGAACTTGGGTCCTCTGCAAGACCAGGCAGTTCTACTTACAGATGAGC
TGTTTCTTTAGATCTCAGTAAATGCATGAAAATGCATATCGATAAATGTA
TATGTTGCTTTGAGCTTTGCAGTCTATAGAAATTAATCCAAAATTCATCT
TCAAACACTTTTTGTCTACCAATCACATTACTTATTCAAAATATAATTCT
AGAAAATTTTTTTATCCCCCCCCCAGACATAAAGTGTACAATGAACAAAA
AGAGGCCATTGCCTGGATTACACAGATTTAGAAATCTCTTCTATTGATAC
CACCAAACACTTAGCACCCCCCACAGTTGTTTTCAAATTAATAGAACATG
CCTTACATTGGCACATAATTTTAAAAATAAAAATTGTTTTTTTGTACCTG
AAATATTTATGCTCGCAGAAATAGAAACCAGTATTTGTTACAAAAATAAC
CAGACAGGAGCAATAAGAATTCCTCAAAACAGCAAATTTATAGTTTGGGA
GTTTATAAATATTTCAAGAAGATTGCGAAATCTACTGACTATATAGAGCA
TTTCTTTCTGGACAGGCATACAAACATCGGATGTCATTGGCTGATCCATC
CCTTCTGTTTTAACATGTAATTTATTACCCTGTACTTTCTGTTTGGAGAC
AGCCTGAAGTGTTTACTCTAATACAATTTTGCACTTTGAGCTTTGTTTGT
TGTACTTATGCCATGCCCATTAGACCCTGGACTTCTCATGNACTGCTGTT
CATAGTTAAGTTCTCTGTAAGACTATATTCACCCAAGGCTTGAAAAGAAA
AGCTCTGCTCCAAAGAAGACTAAAAAAGCCCATTTAAGCCGCCTCTCTAA
ACCCCAGGTGGAACGTAAACTATTGCCGGAACCTTTTGTAAGTAAAACAC
GTTAAACACGGAAACTGTTGGGGTAACCCCCCAAAATTAAGAAAATTCCG
GCCCTGGTAAATACCAAACCGAAAAACAGCCGTTTTTACATAATAAATTG
TTCTATGTCCAAATCCAAACAAATCCCTGTTTTAGTCCAAAGACTTGGTT
TTAGGCCCCCCACCCGGCGTTTC
NNNTTTCACTGAGGCTGAGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAACATCTACATCCCAAATGCCAAA
GCACCACATTTGCAAAAGAAATATTACTAGAGTGTAAATCACACATAGAA
CCCCACTCAATAATAGCAGGAGACATTAACACCCAACTCTAAACAATGGG
CAGGTTATCAAGACAGAAACTAAATAGAGAAATAATGTAACTAACAGGTA
TTACAATTCAAATGGACCTAACAGATATCACAGAACATGTCACCTAAACA
CAAAATAATATATCTACACAGCACCTCACGGAACCATCTCCAGAACTGAC
CATATTTAGTCTCAAAGAAGGTCTCAACAGACACAAGAAAAATTAAAGCA
ACCCTCCTTTTCTAATCAAACAACCAGGGATTAAAGCTCAATTTCAACAA
CAAAAAGTTTATTTTTTCTCCCCCCCCCAANAANTCCCTTCTGAACAAAA
AAAAGAGAGGGGGGNNGATAAAGAAAGAAATTANAAACTTCCTAGAATTC
AATGAAAATGAGTGCACAATATACCCAAACTGAGGAGCCACGATGAAAGC
AGTGCTAAGAGAAAAGTTCATAGCATTAAGTAACTTCATAAAGAAAGAGA
GAGATCTCATACTGGCAACTTAACAGTGTACCGGAAAGCTCTAGAATAAA
AAGAAGCAAGCACAGCCAAGATCAGTAGATGACAAGAAATAATCAAACTT
AGGACTGAAATCAATAAAATAGCAACAAAGAATCAATTAAAACAAAGTGT
TGTGTATTTCTAGAAAATCAATGAGCTAGATAAATCCTTATCCAAACTAA
CTAAAATGCAGAAAGAGAAAATTCAAATTAACAAAATCCGAAAGAAAAAC
AGAGACTTATCCATAGGGCCCCAAGGAAATCTGAAAAATCCGTAAGGTCA
TACTTTAGAAACCCTGTACTCCACAAATTTGAAAGGTCCTAAAAGAATGG
CACAAATTTCTTGAAAGATTCCCCTTACCCAAAGTTATCCAGAACAGATA
ACCATTTTAATAGCCCTAAATACCTAAGAAAGTAAAAGCGTCCTTAAAGG
CCCTTCCCACTCCCTCAAAATCAAAACGCCCCCCAGCTAAAATTCTCCGA
ATTTTCAAGAAAACAATCCCTTATTACCAGAGTTTTTACCAAAAAAAAAA
GGACTTTCCAATTTCTTTTAAATCCCACCCTATGACGCCCCCCCACAAAT
TCCCCAAATTATAAAATTTCCCTGAAAGTGGGAAACACCTAAATTCTAAA
TGCGCCCCAGAACCTAAGGTCCCCGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_d07.b1 MSMg01no305_d07.b1 CHROMAT_FILE:
MSMg01no305_d07.b1 PHD_FILE: MSMg01no305_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:50 2005
         (421 letters)



>mm_chr6_141462932_141463752
          Length = 821

 Score =  795 bits (411), Expect = 0.0
 Identities = 411/411 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctgtggaggtttccacattgaatagtgaatataatgagacattcgagccacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctgtggaggtttccacattgaatagtgaatataatgagacattcgagccacag 264

                                                                       
Query: 65  aagacaaacaaggttctaaagaacttgaccctgtaggaatgaggattttggatcatgcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagacaaacaaggttctaaagaacttgaccctgtaggaatgaggattttggatcatgcta 324

                                                                       
Query: 125 tctctaaaagctttcaaccaagggaagtactgaaaaagaaacatggaaaatggatttttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctctaaaagctttcaaccaagggaagtactgaaaaagaaacatggaaaatggatttttc 384

                                                                       
Query: 185 cctgctgatgtggatgctgggaaccgaacttgggtcctctgcaagaccaggcagttctac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgctgatgtggatgctgggaaccgaacttgggtcctctgcaagaccaggcagttctac 444

                                                                       
Query: 245 ttacagatgagctgtttctttagatctcagtaaatgcatgaaaatgcatatcgataaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttacagatgagctgtttctttagatctcagtaaatgcatgaaaatgcatatcgataaatg 504

                                                                       
Query: 305 tatatgttgctttgagctttgcagtctatagaaattaatccaaaattcatcttcaaacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatatgttgctttgagctttgcagtctatagaaattaatccaaaattcatcttcaaacac 564

                                                              
Query: 365 tttttgtctaccaatcacattacttattcaaaatataattctagaaaattt 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttttgtctaccaatcacattacttattcaaaatataattctagaaaattt 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)