TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGCGATTGTGAACAGCCCAATATGGGTGCTGAAAACCCAACTC
ATACCCTCTGCCAGAGTCATGTGAGTTCATAACCACTGAGCCATCCCTTC
AGTCCAGGGTATCTTTTTTCTCCCCCCCCCACCCCAATATTAATTTCTCT
TCAAAAGCTCTTGTGATTCCTCACTTGGGATTTTTAGTTTAGAAAACTCC
TGTTTTCTCTGATAACTCCATTATCATCTCCTCTGATCACTGAGAAAAAA
ATGTGATATTTGACTGATGAAGGGCTAGTTTACGGGCATCTTTCTCCAGG
ATGTCCCGAACACCTATGCAGGCGATGAGGCACTTTAGATCTTCAGGGGA
GTGAGGTACCTACCACTAATTAAAGGATTGGCAACCAAGGGGGGGAAAGC
AAATCTCCCATTCATCTTTACTTCAGGGAGTTTCCAACCTTCTGGTCCGC
TAGAAAAAAAACACAACTTAAATATTCNNNNNNNNNNNNNNNCCCACCAA
AGAAAGTTAGTTTATAGTNNNNNNAGAAATCCAGGAATTTTTTCTTTTTT
AACGGAGGTCTTTTGCGGGGGGCCCGCNNCCCCCAACTCCCGGAAAAAGA
AATTTCCACCTGGAATGGATAATTGNNGNNCCATCCGAGATGACAACAAT
GAGAAAAACTGGNNNNNNNNNNNNNNNNNNNNCTGGAAAAAGGGGGGAA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGAAGGTGCCCCCACTGCAGTTTCGGGC
ATTCTTTATCTAAAGACATCTGAGCATCAGATCACCCAATTACAAACCTG
GGAGCCATGAGGTAGGTCAGCACCAAAGCAGAAGGCCTAGGGCTGCTGCA
GCTACAAGAAGACATCATTTACCCATAAAGCCATGTTCTGAGCTGGCACA
GAACAAGCCCACTCTGCCATTCCTCCATTCTGAAAATAGGACAAGCACGG
GGGAAATCCAAATGTTCATTGGAAGAACAACATTTCCCAGGCCGGTTTGG
AGTAATTATTTCTTTTGCTTAAAAATTTACTACAACTTATTTTATCCTAT
CCATGTCTCTCGATTGGTTTTGTCTTGATGGAAAACAAGGCAGTAGAGTG
CTCTTCTCTATAGTCAAGTTTTTACTCATTTCTGGCTTGTTTGGTAAGTT
AGGCAGCCAGTGAAATTGGACAACAGGCTAGATCCTGTCAGACAAGGGAA
GTCCTCTCATCTTTACCCATGACGTGGCTGCTATAGGCCATGTTCTAGTT
TCATATTTTCCCGTTTGCTTCCAGTTGTCCTCTAACCTAATTCCCCAGGT
TTATTTTTGGACAATTTCTTAAAATAAGCACTCCCTAATCTGTTCATTTA
ATTAATGACAAAAGCAAAGTGGAGCCATGAATGTTTGCTATT

Query= MSMg01no306_b08.g1 MSMg01no306_b08.g1 CHROMAT_FILE:
MSMg01no306_b08.g1 PHD_FILE: MSMg01no306_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:45 2005
         (669 letters)



>mm_chr6_107521474_107522541
          Length = 1068

 Score = 1247 bits (645), Expect = 0.0
 Identities = 663/669 (99%), Gaps = 1/669 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggtgcccccactgcagtttcgggcattctttatctaaagacatctgagcatcagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaggtgcccccactgcagtttcgggcattctttatctaaagacatctgagcatcagatc 260

                                                                       
Query: 61  acccaattacaaacctgggagccatgaggtaggtcagcaccaaagcagaaggcctagggc 120
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 acccaattacaaatctgggagccatgaggcaggtcagcaccaaagcagaaggcctagggc 320

                                                                       
Query: 121 tgctgcagctacaagaagacatcatttacccataaagccatgttctgagctggcacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgcagctacaagaagacatcatttacccataaagccatgttctgagctggcacagaa 380

                                                                       
Query: 181 caagcccactctgccattcctccattctgaaaataggacaagcacgggggaaatccaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 381 caagcccactctgccattcctccattctgaaaataggacaagcacagggg-aatccaaat 439

                                                                       
Query: 241 gttcattggaagaacaacatttcccaggccggtttggagtaattatttcttttgcttaaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttcactggaagaacaacatttcccaggccggtttggagtaattatttcttttgcttaaa 499

                                                                       
Query: 301 aatttactacaacttattttatcctatccatgtctctcgattggttttgtcttgatggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatttactacaacttattttatcctatccatgtctctcgattggttttgtcttgatggaa 559

                                                                       
Query: 361 aacaaggcagtagagtgctcttctctatagtcaagtttttactcatttctggcttgtttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacaaggcagtagagtgctcttctctatagtcaagtttttactcatttctggcttgtttg 619

                                                                       
Query: 421 gtaagttaggcagccagtgaaattggacaacaggctagatcctgtcagacaagggaagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtaagttaggcagccagtgaaattggacaacaggctagatcctgtcagacaagggaagtc 679

                                                                       
Query: 481 ctctcatctttacccatgacgtggctgctataggccatgttctagtttcatattttcccg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctctcatctttacccatgacgtggctgctataggccatgttctagtttcatattttcccg 739

                                                                       
Query: 541 tttgcttccagttgtcctctaacctaattccccaggtttatttttggacaatttcttaaa 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 740 tttgcttccagttgtcctctaacctaattccccgggtttatttttggacaatttcttaaa 799

                                                                       
Query: 601 ataagcactccctaatctgttcatttaattaatgacaaaagcaaagtggagccatgaatg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ataagcactccctaatctgttcatttaattaatgacaaaagcaaagtggagccatgaatg 859

                    
Query: 661 tttgctatt 669
           |||||||||
Sbjct: 860 tttgctatt 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space:   697222
Effective search space used:   697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)