Query= MSMg01no306_d05.b1 MSMg01no306_d05.b1 CHROMAT_FILE:
MSMg01no306_d05.b1 PHD_FILE: MSMg01no306_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:54 2005
(329 letters)
>mm_chr6_55897114_55897841
Length = 728
Score = 580 bits (300), Expect = e-170
Identities = 318/324 (98%), Gaps = 1/324 (0%)
Strand = Plus / Minus
Query: 6 aatttcagtctagataaatattctgaaaatagaatagtatatgaatttattccttaaaca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aatttcagtctagataaatattctgaaaatagaatagtatatgaatttattccttaaaca 469
Query: 66 gtaccttctttgtctgctccacactttttcttttcttttttaaattagccattgcttcaa 125
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtaccttctttgtctg-tgtacactttttcttttcttttttaaattagccattgcttcaa 410
Query: 126 taaaaacaaagagaccagatccaattttgagaagtatgtctgattcattgtcctggagaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 409 taaaaacaaagagaccagatccaattttgagaagtatgtctgattcattgtcctgaagaa 350
Query: 186 tttgatataatgataaattttaatttagacctgagtttattccatattccaaaacagagg 245
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 349 tttgatataatgataaattttaatttagacctgggtttattccatattccaaaacagagg 290
Query: 246 gataggagttcccaggactagataaatagtgaattaaaaatccaaataacatgatactat 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gataggagttcccaggactagataaatagtgaattaaaaatccaaataacatgatactat 230
Query: 306 gaaaatttaagttttctcttgtct 329
|||||| |||||||||||||||||
Sbjct: 229 gaaaatctaagttttctcttgtct 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 728
Length adjustment: 9
Effective length of query: 320
Effective length of database: 719
Effective search space: 230080
Effective search space used: 230080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_d05.g1 MSMg01no306_d05.g1 CHROMAT_FILE:
MSMg01no306_d05.g1 PHD_FILE: MSMg01no306_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:55 2005
(527 letters)
>mm_chr6_55826824_55827754
Length = 931
Score = 930 bits (481), Expect = 0.0
Identities = 517/531 (97%), Gaps = 4/531 (0%)
Strand = Plus / Plus
Query: 1 cagagccacactgggaataagttgaagagagggaagaaaaggggttactgctaagaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagccacactgggaataagttgaagagagggaagaaaaggggttactgctaagaaagg 260
Query: 61 taaggttcaaactcagaaaatctggtgagggtataaggtgatagatatcacactaccttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 taaggttcaaactcagaaaatctggtgagggtataaggtgatagatatcacactatcttc 320
Query: 121 ctactttctccagagacagtggcttaacacagacagaaacttcttcttagtgtactggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctactttctccagagacagtggcttaacacagacagaaacttcttcttagtgtactggat 380
Query: 181 actttccctgtcccttgtttccatgttaattttaataattgcagaagacttgcagccacc 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttccatgtcccttgtttccatgttaattttaataattgcagaagacttgcagccacc 440
Query: 241 cttcccacttatttgccaactaatataggcattatgaataatgctc----accttcagct 296
||||||||||||||||||||||| |||||||||||||||||||||| || |||||||
Sbjct: 441 cttcccacttatttgccaactaacataggcattatgaataatgctctttcactttcagct 500
Query: 297 atgtttgatatcaaatattatggcattgcagcgaaaatctctctgccccccctttaagtt 356
| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 501 acgtttgatatcaaatattatggcattgcagtgaaaatctctctgtcccccctttaagtt 560
Query: 357 accccagaacattgtctaacagtagatagtgacttataaacaactaaaaactaaaaactg 416
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 accccaaaacattgtctaacagtagatagtgacttataagcaactaaaaactaaaaactg 620
Query: 417 ccaagtccagacaatgttctcttattggcctcttactgccagtttgaccatatgggcttg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagtccagacaatgttctcttattggcctcttactgccagtttgaccatatgggcttg 680
Query: 477 gtggagcaccaaggatccacccataaccagacattcaaagcctctttgagg 527
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtggagcagcaaggatccacccataaccagacattcaaagcctctttgagg 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 931
Length adjustment: 10
Effective length of query: 517
Effective length of database: 921
Effective search space: 476157
Effective search space used: 476157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
