BAC Information

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BAC

Clone NameMSMg01-306H11
Chromosome6 (Build37)
Map Location 97,770,707 - 97,846,415
singlet/doubletdoublet
Overlap geneLOC100043692
Upstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241
Downstream geneMitf, Gm765, LOC666019, LOC665963, LOC665979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306H11.T7 (MSMg01no306_h11.b1)MSMg01-306H11.TJ (MSMg01no306_h11.g1)
ACCAG431120AG431121
length730741
length of high quality
(start - end)
533 (71 - 603)204 (58 - 261)
definitionCHROMAT_FILE: MSMg01no306_h11.b1 PHD_FILE: MSMg01no306_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:15 2005CHROMAT_FILE: MSMg01no306_h11.g1 PHD_FILE: MSMg01no306_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,845,883 - 97,846,415)(97,770,707 - 97,770,910)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAGCTGTCCTCATCACATACATTCAATAAAGGGGCATTTTGAC
AACAATTCAGACAGAATTAAACCCACTATTCCACCCTACTGTCCTTCAAG
TACCTTCTTGGCCATGTGCAAACACACACACATATACAAACACACATGCA
CACATGCACATATACACACAAAAGTAAACACCACTTTAGTTTTCACACAA
GTCACAGACACAACAGTTTGTTCAAGAAAACATCCCTAGGCACAGTGCTA
CTGTAGTAGTATTATGTTGGTGCCATGTGGACACATGTTGTCATTTAGGC
TCCTCAGCATCTTTAATACATTTCTTACACAGAGAAAAAACAAAAACAAA
ACTCTCTTTCATGAGTTTACAAGGAAGCTTTAGCTTTAGCATTAGAAGCT
AAAGGTCTCCATCCCCTGACTTTCCTGCTTGCAGGATGCAGAAAGGGACC
TTAGCTCGGTCACTTAGGTAAGTCAGAAACAGCAGAGCGACATGTTCACT
GGTAGTTTCGGCACCAGGGTTTAGTTGTGTGGCACGCTGTCAAGGTGGCA
TTAGGAGAACACCAATGGCGGTCTGTGTGTCCATGGAGAACATTCATCAT
CCCCATGTGCTCANGACCACCACGCTACTACTGCCTTGCTGCTCACCGCA
CATCCCCATCTTACTCTTGGCTTCCCAGGG
CCTGGCGGCCGCCTGTTTCTGCACGGGGGGTGAACTATAGAAGTTAACCA
GACTTCCAGACAGTTTGTAGAGTGTGGGAGTTTCCAAAACAGAGAGGTGG
AATGACTGGGCTCAGCCAGTGTCCTTTTTATGGCCACAAGACAGCCCTGA
CATAGCAGACGCTTGCTTCCTCTTTGTTCTAAGCCTCAGCACACTTCTCA
TTCCTCTGATTGGAGTGGGTGGGTGGGGGTGGGGCTGTGAAGAAGGAAGG
ACAGGGCCAGTGTCGGGTCAGACAAATTAAGTTCCTAAGAAAGTTCCAGA
TTCAGTANTTACCAGAAATGCAACTTGCGCCTGGGTTTAATCTATTTATA
CCCACCTGCCCCCGCATTATGTGACTTTGCTGTCGCTGCCCAATGAACTT
CTCCAGAGAAAGAACCCCCGCCTGCTCTGACCGTATAATGGTGAAGAGTT
TTCACCACGCCTTCAGGAACTCCTAATTTATGAGAAGGCAGACTCGAACT
TAGATTTTCACTTTTTCCACCCCATTATCTGAGCCCCCTGTAAATGGTTA
CCCCGGTTATGAGCTGTGGCCTTTGCTTGACATCCTACACGCAACTAAAC
AACATTTCTCTAACCTTATTTTTAATATTCCTCCGTACACGTATCACTAC
ATATTATCTTCTTTGTAATCTCTCACTCCCCCCGTATTTTATTCTCCTAC
GCTCGTTTTTGTCGGCCGACTTTCACAGCGAATGCTGTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_h11.b1 MSMg01no306_h11.b1 CHROMAT_FILE:
MSMg01no306_h11.b1 PHD_FILE: MSMg01no306_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:15 2005
         (533 letters)



>mm_chr6_97845533_97846465
          Length = 933

 Score =  984 bits (509), Expect = 0.0
 Identities = 527/533 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatacattcaataaaggggcattttgacaacaattcagacagaattaaacccactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 883 cacatacattcaataaaggggcattttgacaacaattcagacagaattaaagccactatt 824

                                                                       
Query: 61  ccaccctactgtccttcaagtaccttcttggccatgtgcaaacacacacacatatacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ccaccctactgtccttcaagtaccttcttggccatgtgcaaacacacacacatatacaaa 764

                                                                       
Query: 121 cacacatgcacacatgcacatatacacacaaaagtaaacaccactttagttttcacacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 cacacatgcacacatgcacatatacacacaaaagtaaacaccactttagttttcacacaa 704

                                                                       
Query: 181 gtcacagacacaacagtttgttcaagaaaacatccctaggcacagtgctactgtagtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gtcacagacacaacagtttgttcaagaaaacatccctaggcacagtgctactgtagtagt 644

                                                                       
Query: 241 attatgttggtgccatgtggacacatgttgtcatttaggctcctcagcatctttaataca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 643 attatgttggtgccatgtggacacatgttgtcatttaggctcctcagcatctttaagaca 584

                                                                       
Query: 301 tttcttacacagagaaaaaacaaaaacaaaactctctttcatgagtttacaaggaagctt 360
           ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tttcttagagagaaaaaaaacaaaaacaaaactctctttcatgagtttacaaggaagctt 524

                                                                       
Query: 361 tagctttagcattagaagctaaaggtctccatcccctgactttcctgcttgcaggatgca 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 523 tagctttagcattagaagctaaaggtctccatcccctgacttccctgcttgcaggatgca 464

                                                                       
Query: 421 gaaagggaccttagctcggtcacttaggtaagtcagaaacagcagagcgacatgttcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaaagggaccttagctcggtcacttaggtaagtcagaaacagcagagcgacatgttcact 404

                                                                
Query: 481 ggtagtttcggcaccagggtttagttgtgtggcacgctgtcaaggtggcatta 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggtagtttcggcaccagggtttagttgtgtggcacgctgtcaaggtggcatta 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no306_h11.g1 MSMg01no306_h11.g1 CHROMAT_FILE:
MSMg01no306_h11.g1 PHD_FILE: MSMg01no306_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:16 2005
         (204 letters)



>mm_chr6_97770507_97771110
          Length = 604

 Score =  387 bits (200), Expect = e-112
 Identities = 203/204 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacagtttgtagagtgtgggagtttccaaaacagagaggtggaatgactgggctcagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacagtttgtagagtgtgggagtttccaaaacagagaggtggaatgactgggctcagcc 260

                                                                       
Query: 61  agtgtcctttttatggccacaagacagccctgacatagcagacgcttgcttcctctttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtcctttttatggccacaagacagccctgacatagcagacgcttgcttcctctttgt 320

                                                                       
Query: 121 tctaagcctcagcacacttctcattcctctgattggagtgggtgggtgggggtggggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tctaagcctcagcacacttctcattcctctgattggagtgggtgggtgggggtggggcta 380

                                   
Query: 181 tgaagaaggaaggacagggccagt 204
           ||||||||||||||||||||||||
Sbjct: 381 tgaagaaggaaggacagggccagt 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)