BAC Information

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BAC

Clone NameMSMg01-306L21
Chromosome6 (Build37)
Map Location 95,483,123 - 95,641,515
singlet/doubletdoublet
Overlap geneSuclg2
Upstream geneSlc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
Downstream geneLOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306L21.T7 (MSMg01no306_l21.b1)MSMg01-306L21.TJ (MSMg01no306_l21.g1)
ACCAG431314AG431315
length735736
length of high quality
(start - end)		635 (77 - 711)648 (74 - 721)
definitionCHROMAT_FILE: MSMg01no306_l21.b1 PHD_FILE: MSMg01no306_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:37 2005CHROMAT_FILE: MSMg01no306_l21.g1 PHD_FILE: MSMg01no306_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,640,881 - 95,641,515)(95,483,123 - 95,483,770)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTACAGCCTTCCGTCATTTCAAGTAGTAAGTGTTTTGTTCATTTA
TGTAAGTCAGTAAGTTGCCCTTCCCCCTTATTGATTAAAACGTCTTAGCT
TTTGAAGGACTCGCAGGTATAATTTCTCCAATATAGATTGTACTTTCATT
TTTTAAAATCCACGGTTGAGTTCTGTGCATGATAAAGTGGAAGCAAGTGC
TTATCAATTTTTTTATTGAAATCATCTGAATAAGTGTTTTCTCTTGGTTA
GTTTCACACGGAGTCATATTCCTGAATCTAATTAGAGGCAGTTCATGTAC
TGTGGGCTTATTAAGATTCAAGGCACTTTTTTATTTTAGCCTGTCTGATA
TCCCTTTTTAATTTCACTTAAATTTGAATTACTCTAACGTCTTCTGGGTA
TATTGAAGATACTCAGTAATATTAATAATGATGATGTTGACGAGCCTGTC
TCGTCTCATTCTCCCAAGTCACATAACTTTATTTTGCTTCTAGCATGTGA
ATATTTACGATTTTATGTCTTCCTGTGGCAAACATCAGTAATCAATCATG
AGTTTATTCTGATGGGTCTAGACAGAGCCTCATGGTCTTACTTGATGAAG
CACCGTGAGCCACCATTCGCATTCGGTGAGAATTGGCAGACGTTTGCCAT
CTCCGATCCGGATGTTGTTTGTCTTGGGTATGTCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGAAAAACCACCTGGTTCTTGCGAGAGCAGTCAGG
ACTTTTAACTACTGAACTATCTCTGCAGCCGCTGAATGATAATTTTTAAG
AAACCTGACAAAATAGCCATCCTTGAATGAACTGTACTTGGTGATACAAT
TGATGAACACTGATGATGAACATCACAGGATTATCAGATTCATTTATATT
TTCACTTTTACATAATCAATTTTCATGATCATGTTATATTTCCACAACTT
AAATAAAAAGATGTTCTTGTGATACTTCTTTGTGTAAAATACAAACTCAG
TGGGGAGAGCAAGCTCATGCAGCAGGAAGTTTGGACAACTGTGTAAATCT
TAAGAATGGGACTGTCACAGTGAAAGATTGCAACAGTCACCAAAGTGAGT
ACCCACTATTAAGGCCTCTGAAATCTCTGTAAAATACCAATTTCACAGAA
GAAAGTGATGCTAATATAGTGATGGGCTTGAGGGTTTGTTCATCGATTCT
TTCATACTGTCTTCCAGATATGGAACTTACTTTTCTGTATCTTACAAAGC
AGGCCAAGGCCCAAGTGGGGAGGTCTGCATTGATCTGTAAAGTGTAGCAC
TCAGGCGGCAGAGGCAGGAGGATCAGGAGTTAAGAGTCAGTATTGGCCTA
GAGGTGGGTTTGAGGCTGTCCTGGGCAACATCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_l21.b1 MSMg01no306_l21.b1 CHROMAT_FILE:
MSMg01no306_l21.b1 PHD_FILE: MSMg01no306_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:37 2005
         (635 letters)



>mm_chr6_95640821_95641855
          Length = 1035

 Score = 1220 bits (631), Expect = 0.0
 Identities = 634/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtagtaagtgttttgttcatttatgtaagtcagtaagttgcccttcccccttattgatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 695 agtagtaagtgttttgttcatttatgtaagtcagtaagttgcccttccaccttattgatt 636

                                                                       
Query: 61  aaaacgtcttagcttttgaaggactcgcaggtataatttctccaatatagattgtacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaaacgtcttagcttttgaaggactcgcaggtataatttctccaatatagattgtacttt 576

                                                                       
Query: 121 cattttttaaaatccacggttgagttctgtgcatgataaagtggaagcaagtgcttatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cattttttaaaatccacggttgagttctgtgcatgataaagtggaagcaagtgcttatca 516

                                                                       
Query: 181 atttttttattgaaatcatctgaataagtgttttctcttggttagtttcacacggagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atttttttattgaaatcatctgaataagtgttttctcttggttagtttcacacggagtca 456

                                                                       
Query: 241 tattcctgaatctaattagaggcagttcatgtactgtgggcttattaagattcaaggcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tattcctgaatctaattagaggcagttcatgtactgtgggcttattaagattcaaggcac 396

                                                                       
Query: 301 ttttttattttagcctgtctgatatccctttttaatttcacttaaatttgaattactcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttttttattttagcctgtctgatatccctttttaatttcacttaaatttgaattactcta 336

                                                                       
Query: 361 acgtcttctgggtatattgaagatactcagtaatattaataatgatgatgttgacgagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acgtcttctgggtatattgaagatactcagtaatattaataatgatgatgttgacgagcc 276

                                                                       
Query: 421 tgtctcgtctcattctcccaagtcacataactttattttgcttctagcatgtgaatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgtctcgtctcattctcccaagtcacataactttattttgcttctagcatgtgaatattt 216

                                                                       
Query: 481 acgattttatgtcttcctgtggcaaacatcagtaatcaatcatgagtttattctgatggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 acgattttatgtcttcctgtggcaaacatcagtaatcaatcatgagtttattctgatggg 156

                                                                       
Query: 541 tctagacagagcctcatggtcttacttgatgaagcaccgtgagccaccattcgcattcgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tctagacagagcctcatggtcttacttgatgaagcaccgtgagccaccattcgcattcgg 96

                                              
Query: 601 tgagaattggcagacgtttgccatctccgatccgg 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 95  tgagaattggcagacgtttgccatctccgatccgg 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no306_l21.g1 MSMg01no306_l21.g1 CHROMAT_FILE:
MSMg01no306_l21.g1 PHD_FILE: MSMg01no306_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:37 2005
         (648 letters)



>mm_chr6_95482923_95483970
          Length = 1048

 Score = 1199 bits (620), Expect = 0.0
 Identities = 641/648 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctggttcttgcgagagcagtcaggacttttaactactgaactatctctgcagccgct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cacctggttcttgcgagagcagtcaggacttttaactactgaactatctctgtagccgct 260

                                                                       
Query: 61  gaatgataatttttaagaaacctgacaaaatagccatccttgaatgaactgtacttggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgataatttttaagaaacctgacaaaatagccatccttgaatgaactgtacttggtg 320

                                                                       
Query: 121 atacaattgatgaacactgatgatgaacatcacaggattatcagattcatttatattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacaattgatgaacactgatgatgaacatcacaggattatcagattcatttatattttc 380

                                                                       
Query: 181 acttttacataatcaattttcatgatcatgttatatttccacaacttaaataaaaagatg 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttctacataatcaattttcatgatcatgttatatttccacaacttaaataaaaagatg 440

                                                                       
Query: 241 ttcttgtgatacttctttgtgtaaaatacaaactcagtggggagagcaagctcatgcagc 300
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttgtgatacggcattgtgtaaaatacaaactcagtggggagagcaagctcatgcagc 500

                                                                       
Query: 301 aggaagtttggacaactgtgtaaatcttaagaatgggactgtcacagtgaaagattgcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaagtttggacaactgtgtaaatcttaagaatgggactgtcacagtgaaagattgcaa 560

                                                                       
Query: 361 cagtcaccaaagtgagtacccactattaaggcctctgaaatctctgtaaaataccaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtcaccaaagtgagtacccactattaaggcctctgaaatctctgtaaaataccaattt 620

                                                                       
Query: 421 cacagaagaaagtgatgctaatatagtgatgggcttgagggtttgttcatcgattctttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacagaagaaagtgatgctaatatagtgatgggcttgagggtttgttcatcgattctttc 680

                                                                       
Query: 481 atactgtcttccagatatggaacttacttttctgtatcttacaaagcaggccaaggccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atactgtcttccagatatggaacttacttttctgtatcttacaaagcaggccaaggccca 740

                                                                       
Query: 541 agtggggaggtctgcattgatctgtaaagtgtagcactcaggcggcagaggcaggaggat 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgtggaggtctgcattgatctgtaaagtgtagcactcaggcggcagaggcaggaggat 800

                                                           
Query: 601 caggagttaagagtcagtattggcctagaggtgggtttgaggctgtcc 648
           ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 801 caggagttaagagtcagtatttgcctagaggtgggtttgaggctgtcc 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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